Gene MADE_00445 details

Gene Information

• Locus tag: MADE_00445
• Symbol: rplC
• ID: 6777871
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 471036
• End bp: 471674
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 642753877
• Product: 50S ribosomal protein L3
• Protein accession: YP_002124757
• Protein GI: 196155268
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.000559916
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGATTG GTCTAGTCGG TCGTAAAGTG GGTATGACTC GCATCTTCAC TGAAGATGGT 
ACGTCTATCC CTGTGACTGT TATTGAAGCG ACCCCAAACC GTGTTACTCA GCTTCGCACT 
GAGGAATCTG ACGGTTATCG CGCTCTTCAG GTTACTGCTG GAACTAAGAA AGCTAACCGC 
ATCAACAAAG CTGAAGCAGG TCACTTTGCT AAAGCTGGTG TTGAAGCTGG ACGCACTCTA 
GTAGAATTCC GCCTAGAAGA AAACGAAGGT GCCGATATTG AAGTAGGCAG TGAAATCACT 
GTTGAAATCT TTAACGACAC TAAAAAGATT GATGTCACTG GTACATCAAA AGGTAAAGGT 
TTCCAAGGTG CTATCAAACG CTGGAACTTC AGTTCTCAGC GCATGACACA TGGTAACTCT 
TTGTCACACC GTGCTCCTGG TTCAATTGGC CAAAACCAAT CACCAGGTAA AGTATTCAAA 
GGCAAGAAAA TGGCTGGTCA GCTTGGTAAC AAGCAAGTGA CTACGCAGTC TTTGGAAGTT 
GTACGTGTTG ACGTAGAGAA CGGCCTTATC CTAGTTAAAG GTGCCGTACC TGGCGCAACT 
GGCAACGATG TAATCGTAAA GCCAGCTGTT AAAGCGTAA 

 

Protein sequence

MAIGLVGRKV GMTRIFTEDG TSIPVTVIEA TPNRVTQLRT EESDGYRALQ VTAGTKKANR 
INKAEAGHFA KAGVEAGRTL VEFRLEENEG ADIEVGSEIT VEIFNDTKKI DVTGTSKGKG 
FQGAIKRWNF SSQRMTHGNS LSHRAPGSIG QNQSPGKVFK GKKMAGQLGN KQVTTQSLEV 
VRVDVENGLI LVKGAVPGAT GNDVIVKPAV KA