Gene MADE_00263 details

Gene Information

• Locus tag: MADE_00263
• ID: 6776311
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Alteromonas macleodii 'Deep ecotype'
• Kingdom: Bacteria
• Replicon accession: NC_011138
• Strand: +
• Start bp: 280783
• End bp: 284289
• Gene Length: 3507 bp
• Protein Length: 1168 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 642753691
• Product: putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshQ (pilus type IV)
• Protein accession: YP_002124575
• Protein GI: 196155086

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTTCAA CAAATCAAGG TTCGAACCCT GCCATCGTTA AAATTCGCAA CGTTACCAGA 
ACCGGTTTTG AAGCCCTGCC GCTTGAGCCC TCTGGTGAAG ACGGCCCTCA TATCACCATG 
GGGGGACATT ATTTAGCAAT TGCCTATGGC ATTCACGAGT TTCCTGATGG CGACATTGTT 
GAAGTAGGCA AAATGGAATT AGATGCCGAT ACTATCCAAG CTTCAACCAA CTCCCCGTGG 
TACGCACCAA CCGGGCCCTT ACTGCCAGGA ACGGAAGATA CTCGATATGC ACAAGTGCCG 
CTGCAAACAG ATTTTGGTGA GCAACCGGTT TTCTTTCACT CTATTCAAAC CGTTAATAAT 
CAAATTGATG TGAATGGAAA GAAGCCGCCC AATGAACATT TACTGCCATT TCTAACCATT 
GCAGCTAAAT ATGAACCGCC GTCATATTAT ATCGCCTTTG AAGCATCGGA AACCGATTAT 
GAGCCCGTAA CGCGCACCGA AACGGTTGCC TATATGGCCA CCACTGAAGG GTTTGACCGC 
AGGTTCTTCG ATGACAACGG TGTAGAGGTG GTTTGGGAGG CTGACTTTGC AGATGTGCGT 
ATTCAGGGCT GGAGTGACGG CTGTTTTCGA AACAACTTTA AAAACAAATA TGATCAAACG 
CCATTAGTTG CTGCAAGTAA AATTAGCCGC AATGGGGCAG ATGGCGGTTG GCTACGCAGT 
TGTCAAGTGA GTAATACTAG ACTAGGTCTT CGCGTTGATG AAGACCGAAG CCTAGATTCA 
GAACGAAATC ACGCGGAAGA AGACGCCAGT ATTCTGGCGA TGACGTCAGA GTTTGTATTT 
AGTGGTGAAG TGCCAAGTTG TGAGATAGCT TTTCCCGGCG CTCTGTCGAC TTTTAACGGC 
TCAGGTATAT TTTTATCTGC TAGAAGTCGA ATTATTGATG AAAATAATGG AGCCTTAACT 
ACTGTAAGCT ACGATACCGA TGCAAGAGGA AATGGTCGCA ACCTTCCTGA TTGTGGCGTT 
GATGCAATTG ATTGCTTCGC CACTAACACT GATGCGCTAA CTGCTTCTCA GGCAAAAGCG 
ATACCCTCTG TGGCGATTGA AGATACAGGA CCTGCGATCT TAGATAGAGA ACTTGGAGGC 
GACTACTACT TTAAGCGTGA ACAAGTATCT TTCGTTGGCA GTTACAACAT CATTGCTCCT 
ACACGTATCT TTTTGGCAAG CCCTTCAAGC TTAACTCAAA CTCGCCTTAT CATGGAAAGT 
GCCAGTATCA ATGTTGCGGA TGGCGCTTAT TTAGCAATAT ACGTTGAAGG CGATGTCATA 
CTAAATAATT CAAATCCAAA TGCTTTTGTT ATAGCGACTG GTGAGATTAA CTTTATCAAT 
ATTCAAGATG GTCTATTAGT TGGTCGCTTT ACCGCAGGGG GAGGTATAAC CACTGGTGGG 
CAACTATTCC TTAATGCCAC TCAAACGGTG CCAACCAATA TTCCCGGCAT ATGCGGACGC 
GAGGTTATTG AAGTACTAAA TCACTATCGC TACGAACTAG TGGATAACAA AGGCAGTAGC 
TGTGCGGCGA AAGAGATCAC GCTTAAAGCC TGTGCAGATG TAAATTGCGA CCTCATTTAC 
TCTCAGCCGT CTACGGTTAG TCTATCTCCT CAAAATAGCA ATAATTTTGA GTGGAGCGGA 
AGCGATGTCG TCTCGTTTAC AGGGCAAATT TCGTTAGCGT TAGACAGCTT GAAAGGGAAC 
GATACAAAAC TCGCAACGTT AGGTGAAACG CCATCGTCCC AACTACGCTG TTTCATTGGC 
GGAAAAGATG TTGGTATCGA AGGCTGCAAA ATTAATTTTG AAGACGATGG TTTAGTATTT 
AAAAACCTCA CAGACAATAA CACTACCATT GTACCCCAGC TATCAGGTAA GCCTTCAGAC 
CAAGGGTTTA ACAGTAAAAC TTATGTAATA GAAGCCTGCG GTAATTCAGA ATTTTTGAAA 
AACAAAATCG TCGATGTCGA CCTGAACTAT AGCTGTTCAA GCTCTAGCAA CTGCTCGAAC 
AAGCTAGCGT TGTCTAATAA TAACAATACG TACGAGCTTG GACTAACGCC AGAAACCGTT 
GCGCTTCAGT TCGATGGGAA CTCTCGCGCT GAGTTTTCAG TGCAGTATCC AGACGCGGGT 
GAATTATCGT TATCAGGTAC CATCACTGAC AGAACTTCGA TTTCAGGGTC GTCTAATATT 
TTCAAAGTGC GCCCCTTTGG TTTTGCGATG GACATTCTTA ATGACAGCGG AACAAGCACA 
AACCTCAACG GGTATGCTAA CAGTGCCAAT GGCACCTTGC TTAAACGTAC CGGCGAAGAC 
TTTGTGGTTG GGCTGCGCAC AGTACAGTGG GTCGACGGTG AAGACAGCAA CAACGATGGT 
GTTCCCGACA ACTTTGACGA CTTGGCGAAT AACAATACCG CTGAGCATTT CACAGGCACG 
GTAACCTTAG CGCCGCAGCA ACGCCTGCCT GCGGGCGGCA CAACGGGCGC GTTAAGCACA 
TCAAGCGTGC TATTTGATGA TGAAGGGAAG GTGAATGTTA GCCTTAATTA CGACGAAGTT 
GGCACCATTT CGATTAACGC ACAAAGCACC TATCTCACAG ACACAACCGT ATTAGGCAAA 
GTTAACAACG TGGGGCGTTT TGCGCCTTCT AATTTTGCGC TTTCAGGCTC AGTAGATGCG 
GCGTGCACGG CTAGTGGTGC CTTCACCTAT TTTGACCAGC CACTCGCTGA TGTGAGTTTT 
TCGCTTACTG CGCTTAACCA TAACGGCAGT CGCACGGTGA ATTATTATGA TGGCTTCGAC 
AAACTGACGA ATTTAAGTTT GCAGGTGGAG CATGCCGGCA GTCTATTGAA CCGGTTAGCA 
AACACCAGTG CTATCACATG GCCGCAAAAC GCGAGCGCTG GGCAAATTAG CTATGCAGAT 
TCAGATATTG CGTTTAGCCG GCTAAGCGGC GCAACACTAG ACGGCGCTTA TTTAGATGCC 
AACATCGTTT TAGTCGCCCA GAGCAGCCAA CTCGACGGTG CCAATTTTAA CGGGTTAACG 
TGCTCAGGTA CCTGCGTGGC TGATATTGGC GGAGCGGTAA GTTTCGCCTA CGGCAGAGCA 
ACGCTTATCA ACAATTATGG CGGTGCCGAT GAAGCATTGT TGCTACCTAT GCGTACCCAA 
TATTGGGATG GGAATAACTG GCGCATAAAC AGCTATGACA GCTGCACAGG CTTTGAACAC 
GATAACATCA ATGATAACTC AGGTGAGCTG GTATCGTCAG AAAACGGCAA CCTCAGCGAG 
GGCGCCTATG AGGTGGGTAC GGGAATGCGC GTGTCATCAC CTAATGGGGC AGGGAATTAC 
CCGGTAACTT ATACGCCAGA TGCATGGCTA TTGTGGGACT GGGACGGTGA CGGGCAGGCT 
GATAACCCGC CAAGTGCTAC GTTAACCTAC GGTGTGTATA GAGGTAACGA CAATATTATT 
TATAAACGCG AGCAAATTAA CAATTAG 

 

Protein sequence

MLSTNQGSNP AIVKIRNVTR TGFEALPLEP SGEDGPHITM GGHYLAIAYG IHEFPDGDIV 
EVGKMELDAD TIQASTNSPW YAPTGPLLPG TEDTRYAQVP LQTDFGEQPV FFHSIQTVNN 
QIDVNGKKPP NEHLLPFLTI AAKYEPPSYY IAFEASETDY EPVTRTETVA YMATTEGFDR 
RFFDDNGVEV VWEADFADVR IQGWSDGCFR NNFKNKYDQT PLVAASKISR NGADGGWLRS 
CQVSNTRLGL RVDEDRSLDS ERNHAEEDAS ILAMTSEFVF SGEVPSCEIA FPGALSTFNG 
SGIFLSARSR IIDENNGALT TVSYDTDARG NGRNLPDCGV DAIDCFATNT DALTASQAKA 
IPSVAIEDTG PAILDRELGG DYYFKREQVS FVGSYNIIAP TRIFLASPSS LTQTRLIMES 
ASINVADGAY LAIYVEGDVI LNNSNPNAFV IATGEINFIN IQDGLLVGRF TAGGGITTGG 
QLFLNATQTV PTNIPGICGR EVIEVLNHYR YELVDNKGSS CAAKEITLKA CADVNCDLIY 
SQPSTVSLSP QNSNNFEWSG SDVVSFTGQI SLALDSLKGN DTKLATLGET PSSQLRCFIG 
GKDVGIEGCK INFEDDGLVF KNLTDNNTTI VPQLSGKPSD QGFNSKTYVI EACGNSEFLK 
NKIVDVDLNY SCSSSSNCSN KLALSNNNNT YELGLTPETV ALQFDGNSRA EFSVQYPDAG 
ELSLSGTITD RTSISGSSNI FKVRPFGFAM DILNDSGTST NLNGYANSAN GTLLKRTGED 
FVVGLRTVQW VDGEDSNNDG VPDNFDDLAN NNTAEHFTGT VTLAPQQRLP AGGTTGALST 
SSVLFDDEGK VNVSLNYDEV GTISINAQST YLTDTTVLGK VNNVGRFAPS NFALSGSVDA 
ACTASGAFTY FDQPLADVSF SLTALNHNGS RTVNYYDGFD KLTNLSLQVE HAGSLLNRLA 
NTSAITWPQN ASAGQISYAD SDIAFSRLSG ATLDGAYLDA NIVLVAQSSQ LDGANFNGLT 
CSGTCVADIG GAVSFAYGRA TLINNYGGAD EALLLPMRTQ YWDGNNWRIN SYDSCTGFEH 
DNINDNSGEL VSSENGNLSE GAYEVGTGMR VSSPNGAGNY PVTYTPDAWL LWDWDGDGQA 
DNPPSATLTY GVYRGNDNII YKREQINN