| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_00254 |
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| Symbol | |
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| ID | 6776716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 273735 |
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| End bp | 275447 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642753682 |
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| Product | putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (pilus type IV) |
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| Protein accession | YP_002124566 |
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| Protein GI | 196155077 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCTC GATTAAAGAT GCGCCTTGGC GATTTATTAG TCCATGAAAA CATTGTTACC
AGCGAACAGC TTGATAGCGC ATTATCGGCT CAGCGTTCAT CAGGCCGGAA ACTCGGTGAT
ACCCTTATCG ACTTGGGGTT CATTAGCGAA CCTCAACTGC TTCGTTTTCT TGCACAACAG
CTAAACATTC CATTTTTAGA TATTACACAA CGCCGTATCG ACCCTGAACA AGCGCAGCTT
ATTCCTGAAG CCTATGCAAG GCGCTACCGC GCGCTGGTGC TTGAGGCTGA TGATGAGGAA
GTACTGCTAG GTATGAGCGA CCCCACCGAC TTAGGCGGTC TTGATCAGTT AGGTCCGCTA
GTAGCGCCGC GCAATATCGA GCTGGCAATA GTTCAAGAAA ATCAGATGTT AGAAGCGTTT
GATTCCGTTT ATCGTCGTAC CCAGGATATA GCGTCATTTG CAGAAAAGTT AGGTGAAGAG
TACGCCGATG AAGCCGACTT TGAACTCTCT GCCTTAGACG ATACCACCTC TGATGCCACC
GTAGTAAAGC TACTTCACTC TATTTTTGAG GATGCGGTTC AGGTGCGAGC ATCAGATATT
CATATAGAGC CAGATGAAAA AATTCTTCGT ATTCGCCAAC GTGTTGATGG GGTGTTACAG
GAAAATACAT TAAACCAAGT AAAGATTGCT TCGGCACTAG TACTTAGATT AAAGCTGATG
TCGGGCTTAG ATATCTCTGA AAAGCGCATA CCGCAAGACG GCCGCTTCAA TATCAAGGTA
AAAGGCCACG TCCTCGATGT GCGTGTATCC ACCATGCCGG TGGCAAATGG TGAAGCTGTA
GTGATGCGTT TGCTAGACCA GTCTGCGGGC CTGTTAACGT TAGACCAAAC GGGAATGCCC
GATGCTATGG CGGAAAAGTT TCGCGCCGCT ATCAACCGCC CTCACGGCAT GATATTGGTA
ACCGGGCCAA CAGGGTCAGG TAAAACGACA ACCTTGTACG GCGCACTAAG CGAGCTTAAC
AAACCTGATT TGAAAATTAT TACCGCTGAA GACCCCATTG AATACCGCTT ACCTCGCATT
AATCAAGTTC AGGTGAACAG CAAAATCGGC TTAGACTTCG CGGCTATTTT GCGTACCACA
CTTCGTCAAG ACCCCGACAT TATCATGGTG GGGGAAATGC GTGACCAAGA AACCGTTGAA
ATTGGATTAA GAGGCGCGTT AACGGGCCAC TTAGTATTGA GTACGCTTCA CACCAATGAC
TCTGTAACCA GTGCTATTCG TCTTATTGAT ATGGGAGCGG CGCCCTATCT TGTGGCTACG
TCGTTACGTG GTGTGTTAGC ACAGCGACTT GTGCGTAGAG TGTGTGAGAA CTGCAAGCAA
GAAAAAGCGC CTTCTGCGCA AGAACAAGCC TGGGTTGGCT TTTTAAAACC TGAACTTACA
AACGCTAGTT TTTACAAGGG GCGAGGCTGT AACAGCTGTA ATCATACCGG TTACAAAGGA
CGTATTGGTG TCTTTGAGTT TTTAGAAATG AATGAAGACA TGATGGAAGC GCTGCGCGAC
GACAATACGC AGGGTTTTGT TGATGCAACA AAGGCAAACA AAGACTTTGT TCCGCTGTCT
CATATGGCGC TAGATTATGC GGCAGAAGGC AAAACTTCTT TAGACGAAGT TTTCAAAGTG
GCTGAGTTTG TACCAGAGGT TGTGAACCAC TAA
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| Protein sequence | MQPRLKMRLG DLLVHENIVT SEQLDSALSA QRSSGRKLGD TLIDLGFISE PQLLRFLAQQ
LNIPFLDITQ RRIDPEQAQL IPEAYARRYR ALVLEADDEE VLLGMSDPTD LGGLDQLGPL
VAPRNIELAI VQENQMLEAF DSVYRRTQDI ASFAEKLGEE YADEADFELS ALDDTTSDAT
VVKLLHSIFE DAVQVRASDI HIEPDEKILR IRQRVDGVLQ ENTLNQVKIA SALVLRLKLM
SGLDISEKRI PQDGRFNIKV KGHVLDVRVS TMPVANGEAV VMRLLDQSAG LLTLDQTGMP
DAMAEKFRAA INRPHGMILV TGPTGSGKTT TLYGALSELN KPDLKIITAE DPIEYRLPRI
NQVQVNSKIG LDFAAILRTT LRQDPDIIMV GEMRDQETVE IGLRGALTGH LVLSTLHTND
SVTSAIRLID MGAAPYLVAT SLRGVLAQRL VRRVCENCKQ EKAPSAQEQA WVGFLKPELT
NASFYKGRGC NSCNHTGYKG RIGVFEFLEM NEDMMEALRD DNTQGFVDAT KANKDFVPLS
HMALDYAAEG KTSLDEVFKV AEFVPEVVNH
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