| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1941 |
|---|
| Symbol | |
|---|
| ID | 5188896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1997177 |
|---|
| End bp | 1997944 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640591779 |
|---|
| Product | single-stranded nucleic acid binding R3H domain-containing protein |
|---|
| Protein accession | YP_001272510 |
|---|
| Protein GI | 148545140 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1847] Predicted RNA-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0000134575 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTTT TTACTGGAAC AACAATTGAA GAAGCAAAAG AAAAGGCCCG TACACAATTG
AAGCCAACCG TTAATCAAAC GATTGAATTT ACGGTTCTTC AACAGCCGCG GCACGGCTTT
CTAGGAATTG GACGACGCCA AGCGCAAGTG GATGCAGTAA TAAAAGATAA AGAAATTGCG
ATGCCCTCAC TGGAAGAAAA AGACGAGCAG CTAGCAAAAG AGCCAGAACA AAATCCTGCA
AGCTTAAATT CCGCTGAAGA TGAGCTCGAT CCTGCTGAAA TCAAGCGGCG GCAACAGGCC
AATCTTAAAA AGGTTCAAGC AACTAGTAAA GAATTAGTTG AGTATCTAAC AACAGTATTT
AAGGAATTGG GTATTGCTGT TGAGCCACGG ATTATTAATT TAGAAGCTCA TGACCTCAAA
ATTGATCTTC AAACTGAGGA AAATGGACGG GTGATCGGTA AGCACGGTCG CCGGATCAAC
GCGATGGAAC AACTTAGTAA TATATTCATG GATTACCATG GAGCGGCAAA AGTAAATGTT
GAACTTGATA CTTCCAATTA TCGTGAACGG CGTCAAGAAG CAGTTCACAA TCTAGCGCAA
AAGGCAGCGA TGGAAGTAGT TGCAAGCGGA AAAGCTGTTT TTATGGACCC AATGCCAGCT
CGTGAACGGA AACAAATTCA CCATGAACTT GAGAATAATA ACCACGTAAA AACATACTCC
CACGGTCGGG AACCTTACCG GAGTATCGTG ATTGCTCCCC AAGACTAA
|
|---|
| Protein sequence | MAVFTGTTIE EAKEKARTQL KPTVNQTIEF TVLQQPRHGF LGIGRRQAQV DAVIKDKEIA
MPSLEEKDEQ LAKEPEQNPA SLNSAEDELD PAEIKRRQQA NLKKVQATSK ELVEYLTTVF
KELGIAVEPR IINLEAHDLK IDLQTEENGR VIGKHGRRIN AMEQLSNIFM DYHGAAKVNV
ELDTSNYRER RQEAVHNLAQ KAAMEVVASG KAVFMDPMPA RERKQIHHEL ENNNHVKTYS
HGREPYRSIV IAPQD
|
|---|
| |