| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1856 |
|---|
| Symbol | |
|---|
| ID | 5189964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | - |
|---|
| Start bp | 1912999 |
|---|
| End bp | 1914981 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640591700 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001272431 |
|---|
| Protein GI | 148545061 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTTT TAGAATTAAA AAACATATAT AAATCATATT ATCTTGATAA AGAGGAATTT
CCAGTTCTTA AGGGAATTAA CTTGCAGTTT GATCGGGGAG AATTTGTATC CATCCTTGGG
GAATCAGGTG GTGGAAAGTC CACTTTAATG AATATCATTG GGGGCCTTGA TCGTAACTTT
GAAGGTGAAG TCCTCGTAAA TGGTAAAATC CTCGACCATA AAAAGGAAAA GCAACTAGAT
AGCTATCGGC GCGCGACGGT GGGTTATATC TATCAGTCCT ATAACTTAAT TTCTCACTTG
ACGGTGCTGG ATAATGTTTT GGTTGCGTTG GATATGACAA CGTTGACTAA GGAAGAACGG
CGAAAGCGCG CGTTGGAACT CTTAGATAAG GTTGGTTTAA GTGAACAAGT AAAAAAGCAT
CCGAACCATT TGTCAGGAGG GCAAAAGCAA CGGGTAGCGA TTGCCCGAGC ATTAGCAAGT
GACCCGCAAA TTATTATTGC TGATGAACCT ACAGGAGCCT TAGATGCACA GAATACCAAA
GAAGTATTAG CATTATTAGA CGAAATTGCT CGTGATGGGA AACTAGTGAT CGCTGTTACT
CACTCCCAGG AAGTAGCGGA TAATGGGACA CGAATTGTTC ATTTAGCTGA TGGAAAAATT
GACGGCGATG AAAGATTGCG TCCTGTTTAT CCGATTCCAG AAGACCCAAC AGAGATTACT
CCACGAGTTT TACCGGCGAT GGCGAGCTAC CGAACGGCTT TTAAACATTT GACCTATAAC
TTTTGGCGTA ATTCGTTAAT TATGCTTGGA ACTGCAATCG GTATCTTTGC CGTACTCTTG
TTTAGTGGTT TAGGTAATGG GATAAATGGT TACATTCAAA ATCAGATTAA CTCTCTTGCT
AATCCGCAGG CAATTACCGT ATTTAAAAAC ACAACTGGTA AAAAGATGAC CCAGGAACAA
ATTCAATCAT CGTTAGGACA AACGATGGCG GCTAATCCTC AATCAATGAC GATTAGTGAC
CATAATATTG ACCGGTTACG AAAGCTTGAT AATGTGTCGT CTGTCCAGCC GGGAATTATG
GTGAGCGCCT TTCAGCTTGA TTATAATGGA AAAAAGCAGA GCGGAACTTC ATTAAGTACC
TGGAGTAAGG CAATTACTAG CAATTCAATC AAGCAGGGAC ATAAACCCAA GAATGGTGAA
ATCGTTCTTA CAAAGCAACA AGCAATCCAA TTATCAAGTG CCAAAAATTA TAAGCAAATG
GTTGGTAAAA CTATCCATCT CTCATTTACA TGGATAGATG GCAATAATAA TCCAGTTCCC
GTTTCTGGAA ACTTCAAGGT AGCAGGGATT ACAGAAGGCG CGAGTGCCGG GACTTCAATT
ACGTACTCCA CCATGCGTGC ACTGCTTCAA AAAGCGAATG CCGCTACTGC TGCTAATTTT
GTAACCGTTA ATGTAACAAA TCTTGACAAT GTTCAAGGAG TAGCGAATAA GATCGACAAT
CTTCGTGGTA GTAATAACAA ACGGATATTA GGAGCGATTA CAGTCGGGTC GATCCTTAAA
ACTGTTAATA CTTATGTTAG TCTTGCTTCC ACGGTTCTTG CTTCAATTGC TGGAATTTCA
TTACTTGTGT CGGCATTAAT GATTATTGTG ACAATGTACA TGTCAGTTTC GGAACGGACA
AAAGAAATCG GTATTTTGCG AGCCTTGGGT GAACGAAAGA AAGATATTCG CCGATTATTT
ACGTCTGAAT CTGTCTTTAT TGGACTGTTT TCCGCAATTC TTGCACTGCT AATTGTTGCA
GTTGTAACGG TTATTATTAA CCACGCTCTG TATGGCTTGA TTAAATATAA TATTGTGCAA
ATTACTGTTG GAAATGTAAT CTTTGCAATT GTAATTGCGA TTGTAATTTC GTTTATTGCC
GCATTGCTTC CTGCACGCCG GGCGGCAAAC CTTAATCCAA TTGATGCATT AGCTGCAGAT
TAG
|
|---|
| Protein sequence | MAFLELKNIY KSYYLDKEEF PVLKGINLQF DRGEFVSILG ESGGGKSTLM NIIGGLDRNF
EGEVLVNGKI LDHKKEKQLD SYRRATVGYI YQSYNLISHL TVLDNVLVAL DMTTLTKEER
RKRALELLDK VGLSEQVKKH PNHLSGGQKQ RVAIARALAS DPQIIIADEP TGALDAQNTK
EVLALLDEIA RDGKLVIAVT HSQEVADNGT RIVHLADGKI DGDERLRPVY PIPEDPTEIT
PRVLPAMASY RTAFKHLTYN FWRNSLIMLG TAIGIFAVLL FSGLGNGING YIQNQINSLA
NPQAITVFKN TTGKKMTQEQ IQSSLGQTMA ANPQSMTISD HNIDRLRKLD NVSSVQPGIM
VSAFQLDYNG KKQSGTSLST WSKAITSNSI KQGHKPKNGE IVLTKQQAIQ LSSAKNYKQM
VGKTIHLSFT WIDGNNNPVP VSGNFKVAGI TEGASAGTSI TYSTMRALLQ KANAATAANF
VTVNVTNLDN VQGVANKIDN LRGSNNKRIL GAITVGSILK TVNTYVSLAS TVLASIAGIS
LLVSALMIIV TMYMSVSERT KEIGILRALG ERKKDIRRLF TSESVFIGLF SAILALLIVA
VVTVIINHAL YGLIKYNIVQ ITVGNVIFAI VIAIVISFIA ALLPARRAAN LNPIDALAAD
|
|---|
| |