| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_1818 |
|---|
| Symbol | |
|---|
| ID | 5189744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 1871752 |
|---|
| End bp | 1872651 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640591663 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001272394 |
|---|
| Protein GI | 148545024 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4120] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000219565 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTAA TCGTATCATC AATCGGTCAA GGACTATTAT GGGCTTTACT TGGTCTTGGT
CTTTACCTGA CTTTTAGAAT TCTTGATTTT GCTGATATGA CTGTTGAAGG GACTTTCCCT
CTTGGGGCTG CCAGTGCTGT CGCTGCAATC ACACATGGCA TTAATCCCTT TCTGGCAACT
TTAATTGCGA TTGGGGCGGG AATGCTCGCT GGTTTGATCA CTGGATTGCT CTACACTAAA
GGAAAAATCC CAAGTTTATT AGCCGGAATT CTAACTATGA CCGCCGCCTA CTCCGTTAAC
CTCCGTATTA TGGGTAAATC AAATGTTTCG TTGCTTGGTC AAAAGACTCT CTTTAGCGGC
GAATTCATGC GAAGTCTACC CCAATACTTT GATAGTGTCT TCTTGGGAAT AGTTACGATT
GCGATTATTA CCGTAATCCT GGTTTTCTTC CTTTCAACTG ACTATGGGCA GGCTTTTATC
GCAACTGGTG ATAATCCTGT GATGGCAAAA TCATTTGGGA TTCATACCGA CACAATGGTC
ATCATCGGTC TAATGGTATC AAATGGGATC GTTGGACTTT GTGGTGCGTT GATTGCTCAA
AATAATGGAT ACGCTGATAT TAATATGGGG ATTGGAACGA TTGTTATCGC CCTTGCCTCA
ATCATTATTG GTGAAGTATC CTTTGGTGAA TTAACGCTTA ACCAGCGACT TGTCGCCGTT
ACTCTTGGTA GTATCATTTA CCGAATCATC TTACTTGCCG TCCTCCAACT TGGTTTCTCT
GCCAACGACC TCAACCTTAT CTCCTCAGTT GTCCTTGCAA TCTGCATGAT GTTACCACAA
CTTGAAGAAC GTATTCACCT TAAAAAGCCA ATTTTGAAAG GAGTCCGGCC TCATGAATAA
|
|---|
| Protein sequence | MNLIVSSIGQ GLLWALLGLG LYLTFRILDF ADMTVEGTFP LGAASAVAAI THGINPFLAT
LIAIGAGMLA GLITGLLYTK GKIPSLLAGI LTMTAAYSVN LRIMGKSNVS LLGQKTLFSG
EFMRSLPQYF DSVFLGIVTI AIITVILVFF LSTDYGQAFI ATGDNPVMAK SFGIHTDTMV
IIGLMVSNGI VGLCGALIAQ NNGYADINMG IGTIVIALAS IIIGEVSFGE LTLNQRLVAV
TLGSIIYRII LLAVLQLGFS ANDLNLISSV VLAICMMLPQ LEERIHLKKP ILKGVRPHE
|
|---|
| |