Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lreu_1492 |
Symbol | rpoB |
ID | 5188381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus reuteri DSM 20016 |
Kingdom | Bacteria |
Replicon accession | NC_009513 |
Strand | - |
Start bp | 1540959 |
End bp | 1544567 |
Gene Length | 3609 bp |
Protein Length | 1202 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640591338 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001272075 |
Protein GI | 148544705 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGGCTGGAC ATTTAGTTAA ATACGGTAAA CACCGTACCC GTCGTAGCTA CTCGCGAATT AAAGAAGTTC TCGAATTGCC AAACCTTATT GAAATCCAAA CCGATTCTTA CAATTGGTTT ATGGAAAAAG GTTTACGGGA AATGTTTGAT GATATTATGC CAATTGATGA TTTTCAAGGA AAGCTTTCTT TGGAATTCGT TGACTATCAA CTTTTAGAAC CTAAGTATAC TGTTGACGAA GCTCGTGAAC ACGATGCTAA TTACTCAGCA CCACTTCATG TTACGTTACG GTTAACTAAC CATGAAACTG GTGAGATTAA GTCTCAAGAT GTATTCTTTG GTGACTTCCC ACTAATGACT GACCAAGGTA CATTCATTAT TAATGGTGCC GAACGGGTTA TTGTTTCACA ATTAGTTCGT TCACCGGGTG TCTACTATAG TGAAGAAAAT GATAAAAATG GTCGGCCAAA CTACGGTGCT ACCTTTATTC CAAACCGTGG TGCATGGTTA GAATACGAAA CTGATGCTAA GAATGTTTCA TATGTTCGAA TCGACCGGAC CCGTAAGTTG CCAATGACTG AATTGATTCG TGCATTGGGC TTTGGATCTG ACGATGAAAT TATCGACATG TTCGGTGGCG ATAGTGAGAC ATTATCATTA ACCTTGGATA AAGATGTTCA CAAGAACGCT GAAGATTCTC GGGTTGAAGA AGCCTTAAAG GACATTTATG AACGGCTTCG TCCTGGTGAA CCAAAGACTG CTGATTCAGC ACGGAGCTTA TTAACAGCTC GTTTCTTTGA TCCAAAGCGT TATGATATGG CACCAGTTGG TCGTTACAAG ACAAACAAGA AGTTGATGCT TAAGTACCGT TTACTTGGAC AAACTTTAGC TGAAACTTTA GCAGATCCTG ATACTGGTGA AGTATTAGCA CAAAAGGGTG ATACGGTAAC CAAGGAATTG CTTAATAAGC TTGAACCTTA CTTAGACCGT GATGACTTTA AGACTATTAC TTACACTCCA TCAGATGAAG CGGTTGTAAC TGAACCAGTT AAGTTACAAA AGATTTTAGT ATATTCTAAG AATGATCCTG ATCGAGTTGT ACCTATTATT GGTAACGGTC ATATCCCATT AGAATACAAG CACATTGAAC CAGCTGATAT TCTTGCTTCC TTAAACTACT TCTTTAACTT ACAAGAAGGT ATTGGTAGCA CAGACGATAT CGACCACTTA GGTAACCGTC GTATTCGTTC AGTTGGTGAA CTACTTCAAA ACCAATTCCG GATTGGTCTT GCACGGATGG AACGGGTTGT TCGTGAACGG ATGTCAATTC AAGATCCTGA CACTGTTACC CCACAGCAAT TAATTAATAT TCGTCCAGTG GTTGCTTCTA TTAAAGAATT CTTTGGTTCA TCCCAACTTT CCCAGTTCAT GGATCAAACC AACCCATTAG GTGAATTAAC TCATAAGCGT CGTCTTTCAG CGCTTGGTCC TGGTGGTTTG ACTCGTGACC GGGCCGGATA TGAAGTGCGG GACGTTCACT ATACTCACTA TGGCCGGATG TGCCCTATTG AAACACCAGA AGGTCCTAAC ATTGGTCTTA TTAACAGTCT TTCATCTTAC GCAAGGGTAA ATAAATATGG ATTTATCGAA ACTCCATACC GTCGTGTTTC CTGGAAGGAT CACAAGGTAA CTGACAAGAT TGATTACTTA ACTGCTGACG AAGAAGATAA CTTCATCATT GCTCAGGCTA ACACGCCATT AAATGATGAT GGTTCATTTG TTGACGATCA AGTAATGGCT CGTGATAAGG ATGATTACAT CGAAACCAGT GTTGAAAACA TTGATTACAT GGATGTTTCT CCTAAGCAAG TTGTTTCTGT TGCCTCTGCA TGTATCCCAT TCCTTGAAAA CGATGACTCT AACCGTGCTT TGATGGGTGC TAACATGCAA CGGCAAGCTG TTCCTTTGAT CAATCCTCAT GCACCATTAG TAAGTACTGG TATTGACTAC AAGGCTGCCC ATGACTCTGG GGTTGCAATG ATTGCTAAGA AGCCAGGAAC GGTTGAATAT GTGGATGCTC GTGAAGTACG GGTTCGTGAA GAAGATGGAA CACTTGATAC TTACAAGTTA ATGAAGTTCC GTCGTTCAAA CGGTGGTAAG AACTACAACC AACGTCCAAT TGTTAAGGTT GGCGAACATG TTGATGCTGA TGACGTATTA GCTGATGGTC CATCAATGGA ACAAGGTGAA TTAGCTCTTG GTCAAAACCC ATTAATCGCC TTTATGACTT GGCAAGGATA CAACTTCGAA GATGCCATCG CCATTAATGA ACGATTAGTT AAAGACGATG TTTATACTTC TATCCACATC GAATCATACG AATCTGAAGC ACGTGAAACC AAGCTTGGAC CTGAAGAAAT GACGCGGGAA ATTCCAAACG TTGGTGACGA TGCTTTGAAG GATCTTGATG AAAACGGGAT TGTTCGTGTC GGTGCCGAAG TTCATGATGG AGATATTTTA GTAGGTAAGG TTACTCCAAA GGGAATGACT GAATTATCTG CCGAAGAACG TCTTCTTCAC GCTATCTTTG GTGAAAAGTC ACGTGAAGTT CGTGATACTT CATTACGTGT TCCTCATGGT GGTGGTGGAA TCATCCAAGA TGTTAAAGTC TTCACTCGTG AAAATGGGGA TGAATTATCA CCAGGTGTAA ATACAATGGT TCGTGTTTAC ATTGCACAAA AGCGGAAGAT CCAAGTTGGG GATAAGATGT CTGGACGTCA TGGTAACAAG GGTACTGTTT CTATCGTTGT GCCAGAAGAA GATATGCCAT ACATGCCAGA TGGAACTCCT ATTGATATTA TGCTTAGTCC GATGGGTGTG CCAAGTCGTA TGAACATTGG TCAGCTTCTT GAATTGCACC TAGGAATGGC TGCTCGTCGT CTTGGAATTC ATATGGCTAC TCCAGTATTC GATGGTGCAT CTGATAAAGA TGTTTGGGAT GCTGTTCGTG AATCTGGATT CCCAGAAGAC GGTAAGACAA TTCTTTATGA CGGTCGTACC GGTGAACCAT TTGAAAACCG AATTGCTGTT GGTTCAATGC ACTATCTTAA GTTAGCTCAC ATGGTTGATG ATAAGATTCA CGCTCGTTCA ACTGGTCCAT ACTCACTTGT TACTCAACAG CCATTAGGTG GTAAGGCACA ATTTGGTGGA CAGCGTTTCG GTGAAATGGA AGTTTGGGCT CTTGAAGCTT ATGGTGCTGC CTACACTCTT CAAGAAATCC TTACTTACAA GTCAGATGAT ACTGTTGGTC GTGTTCGGAC TTATGATGCA ATCATCAATG GTCAACCAAT TCCTAAGCCA GGTGTTCCAG AATCATTCCG TGTTCTTGTT AAGGAATTAC AAGCATTAGG TCTTGATATG AAGGTTCTTG ATGGTAACAA CAAGGAAATT CAGTTAAAGA ACATGGACGA AGATGATGAT GAAGTTGTAA ATGTTGATGC ATTAGCTAAA TATGCAGAAG AACATAAAGC AGACGATAAG AAGAACGAAG AAGAAAACAA GTCTGAAGCA ACTTCAACAA CTACCGATGA CAAAACTAAT CAAAATTAA
|
Protein sequence | MAGHLVKYGK HRTRRSYSRI KEVLELPNLI EIQTDSYNWF MEKGLREMFD DIMPIDDFQG KLSLEFVDYQ LLEPKYTVDE AREHDANYSA PLHVTLRLTN HETGEIKSQD VFFGDFPLMT DQGTFIINGA ERVIVSQLVR SPGVYYSEEN DKNGRPNYGA TFIPNRGAWL EYETDAKNVS YVRIDRTRKL PMTELIRALG FGSDDEIIDM FGGDSETLSL TLDKDVHKNA EDSRVEEALK DIYERLRPGE PKTADSARSL LTARFFDPKR YDMAPVGRYK TNKKLMLKYR LLGQTLAETL ADPDTGEVLA QKGDTVTKEL LNKLEPYLDR DDFKTITYTP SDEAVVTEPV KLQKILVYSK NDPDRVVPII GNGHIPLEYK HIEPADILAS LNYFFNLQEG IGSTDDIDHL GNRRIRSVGE LLQNQFRIGL ARMERVVRER MSIQDPDTVT PQQLINIRPV VASIKEFFGS SQLSQFMDQT NPLGELTHKR RLSALGPGGL TRDRAGYEVR DVHYTHYGRM CPIETPEGPN IGLINSLSSY ARVNKYGFIE TPYRRVSWKD HKVTDKIDYL TADEEDNFII AQANTPLNDD GSFVDDQVMA RDKDDYIETS VENIDYMDVS PKQVVSVASA CIPFLENDDS NRALMGANMQ RQAVPLINPH APLVSTGIDY KAAHDSGVAM IAKKPGTVEY VDAREVRVRE EDGTLDTYKL MKFRRSNGGK NYNQRPIVKV GEHVDADDVL ADGPSMEQGE LALGQNPLIA FMTWQGYNFE DAIAINERLV KDDVYTSIHI ESYESEARET KLGPEEMTRE IPNVGDDALK DLDENGIVRV GAEVHDGDIL VGKVTPKGMT ELSAEERLLH AIFGEKSREV RDTSLRVPHG GGGIIQDVKV FTRENGDELS PGVNTMVRVY IAQKRKIQVG DKMSGRHGNK GTVSIVVPEE DMPYMPDGTP IDIMLSPMGV PSRMNIGQLL ELHLGMAARR LGIHMATPVF DGASDKDVWD AVRESGFPED GKTILYDGRT GEPFENRIAV GSMHYLKLAH MVDDKIHARS TGPYSLVTQQ PLGGKAQFGG QRFGEMEVWA LEAYGAAYTL QEILTYKSDD TVGRVRTYDA IINGQPIPKP GVPESFRVLV KELQALGLDM KVLDGNNKEI QLKNMDEDDD EVVNVDALAK YAEEHKADDK KNEEENKSEA TSTTTDDKTN QN
|
| |