| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lreu_0414 |
|---|
| Symbol | |
|---|
| ID | 5190168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus reuteri DSM 20016 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009513 |
|---|
| Strand | + |
|---|
| Start bp | 467392 |
|---|
| End bp | 468198 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640590219 |
|---|
| Product | Cof-like hydrolase |
|---|
| Protein accession | YP_001271020 |
|---|
| Protein GI | 148543650 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0522924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAGA TGATTGCGCT AGACCTAGAT AATACGCTTT TAAATAGTAA TAAAGAAATT
AGTCAACGTA ATGAACATGT CCTAAAGCAA TTACATCAAG AGGGAATTAA GGTAGTGCTT
TGTACTGGCC GCCCAATCAA TGCAATTTGG CCATATATTG AACAGCTTGG TTTAACTGAT
TCAGATGATT ACACAATTAC GTTTAATGGC GGATTAGTTA TTAATAATGA ATCACGTGAA
CATCTTTTTG AATTAGGGAT GAAAAAGAGT GATTTACTGC CACTATTTTC TTATGTTAAA
CGAAAAAAGA TTCCCCTCAA TGTTTTAGAC TTTGAACGGG TATACGAATT AAATGATTAT
CCAGGATCTA TTTATCGGAC AGTGTTAAAG AATATTGAAT TCCAATCTTT GCCAATGAGT
GATATGCCGG AAAAAACTTA TAGTAAAGCT GTAATGGCAA TCACCCCTGA AAAATTGTCT
ACTATTATAG GAGAACTTCC AGCTAATCTT AAAGCGCAGT ATCATGCAGT TCAATCCCAA
CCGATGATAA TGGAATTTTT ACCTAAAAAA TTAAATAAGG CGGTTGGATT GAAGGCCTTA
CTGGATCATT TTGGTGATGA TTTTAGTAAT TTAATGACAT TTGGGGATGC TGATAATGAT
CTTGAAATGA TCAAAGCTGC GGCTCAAGGA ATTGTAATGG AAAATGGTCT TCCTAACGTT
AAGGCAGTGG CGACAGCAAT CACAGATACA AATGATAATG ATGGAGTTGC AAGGTATTGT
GAACGTTATT TTGCAACACT TTTGTAA
|
|---|
| Protein sequence | MIKMIALDLD NTLLNSNKEI SQRNEHVLKQ LHQEGIKVVL CTGRPINAIW PYIEQLGLTD
SDDYTITFNG GLVINNESRE HLFELGMKKS DLLPLFSYVK RKKIPLNVLD FERVYELNDY
PGSIYRTVLK NIEFQSLPMS DMPEKTYSKA VMAITPEKLS TIIGELPANL KAQYHAVQSQ
PMIMEFLPKK LNKAVGLKAL LDHFGDDFSN LMTFGDADND LEMIKAAAQG IVMENGLPNV
KAVATAITDT NDNDGVARYC ERYFATLL
|
|---|
| |