Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lreu_0085 |
Symbol | carB |
ID | 5189817 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus reuteri DSM 20016 |
Kingdom | Bacteria |
Replicon accession | NC_009513 |
Strand | - |
Start bp | 102442 |
End bp | 105612 |
Gene Length | 3171 bp |
Protein Length | 1056 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640589880 |
Product | carbamoyl phosphate synthase large subunit |
Protein accession | YP_001270697 |
Protein GI | 148543327 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00260745 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTAAAC GAACTGATAT TCATAAAATT CTTGTCATCG GGTCTGGTCC TATTATTATT GGCCAAGCAG CTGAATTTGA TTATTCTGGC ACGCAGGCTT GTCTTGCCCT CCGCGAAGAA GGATACGAAA CCATCCTTGT TAATTCTAAT CCAGCAACAA TCATGACTGA TAAGGAAATT GCTGATCATG TCTACATCGA ACCATTAACG GTTGAATCCC TCTCTCGAAT TATCCGTCAA GAATATCCCG ATGCAATTTT ACCAACCCTT GGCGGACAAA TCGGCCTCAA CTTAGCTGTC TCTTTATCTG AAACTGGTCT CCTTGACGAA TTAGGAATTG AACTTCTTGG AACTAAGCTG GATTCGATTG ATGAAGCAGA AGACCGCGAA AAATTTAAGG AATTAATGAA TGAACTTGGT GAACCTGTTC CCGCCTCGCA GACAGTTAAT ACTGTTGATG AAGCAGTCGA ATTCGCACAC CAATGTGGAT ATCCAGTAAT CGTCCGTCCA GCCTTTACCA TGGGTGGTAC AGGCGGTGGG ATCTGCCATA ATGATGCAGA AATGCGTACC GTTGCCAAGA ATGGCTTGGA ATTATCCCCC GTCACCCAAT GTTTAATTGA AAAGTCAATC GCTGGTTATA AGGAAATCGA GTTTGAAGTA ATGCGGGATG CAGCTGACAA TGTAATGGTC GTTTGTTGTA TGGAAAACTT TGACCCAGTG GGAATTCATA CCGGTGACTC CATCGTATTT GCCCCTAATC AGACCCTTAG TGATCGCGAA TACCAGATGC TCCGTGATTG CGCGCTCAAG CTGATCCGTG CCCTCAAAAT CGAAGGGGGA TGTAACGTCC AACTGGCCCT TGATCCGCAA AGTTTCCAGT ATAACGTTAT CGAAGTTAAT CCACGGGTTT CCCGTTCGTC TGCTCTTGCT TCGAAGGCAA CGGGTTATCC AATCGCTAAA ATGGCTGCTA AAATTGCGGT TGGCCTTACC CTCGATGAAA TTAAGAATCC CGTTACCAAG ACGACTTTTG CTGAATTTGA ACCGGCACTT GACTATGTTG TCTGCAAAAT TCCCCGCTGG CCGTTTGATA AGTTTACTCA GGCTGATCGA CACCTGGGCA GCCAGATGAA AGCCACGGGA GAAGTAATGG CAATTGGTCG GACAGCTGAG GAAGCTCTCC ATAAGGCTGT CCGCTCACTT GAAATTGATG AAAAAGACCT CTTTTCAGCA GAAGCTCATC ATGCGCCAAC AGATATGCTT GAAAAGAAGT TACGTTATCC CCAAGATGAT CGGTTATTTT ATTTAGCAGA AACATTTCGG CGTGGGTACT CCCTTCAGCA AACTCATGAC TTAACTAAGA TTTCCCCTTA TTTCCTCGAT ATCGTCAAAC ACTTGGTGGA ACTTGAAGAC GATCTTAGTA CCAAGCCATT TGATGTGGAA ACACTGATAA CCAGCAAAAA ATACGGCTTT AGCGATGCAA CAATTGCCCG CCTTTGGCAT ACTTCCTCAC AAGAAGTTCG GAAATTCCGA AAACAAAATG AAGTTCTCCC CGTATATAAG ATGATCGATA CCTGTGCTGC TGAATTTGCT TCTTCAACCC CTTATTTCTA CAGCGCATAT GACCATGAAA ATGAAAGCCA ACGGACAAAG AAGCCATCTA TCCTTGTCCT TGGCTCAGGG CCAATCCGGA TCGGTCAAGG AGTTGAGTTT GACTATGCGA CCGTTCATAG CGTTAAGGCA ATTCAACGGG CTGGCTATGA AGCAATTGTC ATCAATTCGA ATCCAGAAAC TGTTTCGACA GATTTCTCGG TTTCAGATAA ACTCTATTTC GAGCCCCTCA CGCTTGAAGA TGTCCTAAAC GTGATTGATC TCGAACAACC AGTAGGCGTG ATCGTGCAAT TTGGTGGACA AACAGCGATT AATTTAGCAG AAGGTCTTGC TAAAAATGGG GTTAATATTC TTGGAACAAC CGTTGACGAT CTTGATGCCG CTGAAGATCG AGAAGTATTC GATCAAGTTA TCACTGATCT AAATCTTAAG CAGCCAATCG GTTTAACCGC AACTACTCAC TCTGCCGTTA TCAAAGCGGC TGAAAAAATC GGCTATCCCG TTCTTGTTCG TCCAAGTTAT GTTCTCGGTG GTAAGGCCAT GGAGACTGTT TATAATCAAG AAGAACTGCA ACAATACCTT CAACAAAACG CCTCCATTAC TGCTGATCAC CCTATTTTAA TCGATGCCTA CCTTGAAGGA CGGGAATGTG AAGTAGACGC AATTTGCGAT GGAAAGGACG TCCTTATCCC TGGAATAATG GAACATATTG AACATGCGGG CGTTCACTCA GGAGATTCAA TGGCAGTTTA TCCCCCACAA CATTTTAATG ATGACATTAA ACGACAAATC GTTACTGCTA CCGAAAAATT AGCAGTTGCG CTTAAATGTA TCGGCATCAT GAACATCCAA TTTATTGTTC ATAATCATGA GGTGTACATC CTTGAAGTTA ATCCGCGAGC TAGTCGAACA GTGCCATTCC TCAGCAAGAT TACGGGAATC GAAATGGCCC AAGTCGCTAC CAGAGTTATC CTTGGCCAGT CCCTTGCTGA TCAAGGCTTT ACTAACGGTC TTTATCCAGA ACCACAAACC ATTCATGTTA AAGCTCCTGT CTTTAGTTTT AACAAGTTAG CGAACGTTGA TTCTTACCTC AGTCCAGAAA TGAAATCGAC AGGCGAAGTG ATGGGGACAG ATACCACCTA TGAAAAAGCA CTTCATAAAG CCTTTTCTGG CGCACATATT CAAGTCCCTA ACGATGGTAA AATTCTCTTT ACGATTGAAA ACGGGGATGA AAAAGAAGTT CTCCCACTAG CAAAACGGTT TGCTCAGATT GGCTACCAAG TTTTCACTAC CCCGCAAACA GCATCGCACT TTAAAGATAA CGGAATTCAC ATTCATCAAG AAATATCCAA TATCGATGAA CTCAACTGCC TCCTAAAAGC CGGGCAGATC GACCTTGTTA TCAACACCAT GCGCCATGAT TATGAACAAG ATTCACTTGG CTTTCAGATC CGCCAAAGTA CAATCGCGCA AAACGTACCA TTGATGACCT CACTTGATAC AGTCAATGCG TTGCTGCGCG TTAAAGAAGA TCAATCTTTG GAAGCAATAA CAATCAAATA A
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Protein sequence | MPKRTDIHKI LVIGSGPIII GQAAEFDYSG TQACLALREE GYETILVNSN PATIMTDKEI ADHVYIEPLT VESLSRIIRQ EYPDAILPTL GGQIGLNLAV SLSETGLLDE LGIELLGTKL DSIDEAEDRE KFKELMNELG EPVPASQTVN TVDEAVEFAH QCGYPVIVRP AFTMGGTGGG ICHNDAEMRT VAKNGLELSP VTQCLIEKSI AGYKEIEFEV MRDAADNVMV VCCMENFDPV GIHTGDSIVF APNQTLSDRE YQMLRDCALK LIRALKIEGG CNVQLALDPQ SFQYNVIEVN PRVSRSSALA SKATGYPIAK MAAKIAVGLT LDEIKNPVTK TTFAEFEPAL DYVVCKIPRW PFDKFTQADR HLGSQMKATG EVMAIGRTAE EALHKAVRSL EIDEKDLFSA EAHHAPTDML EKKLRYPQDD RLFYLAETFR RGYSLQQTHD LTKISPYFLD IVKHLVELED DLSTKPFDVE TLITSKKYGF SDATIARLWH TSSQEVRKFR KQNEVLPVYK MIDTCAAEFA SSTPYFYSAY DHENESQRTK KPSILVLGSG PIRIGQGVEF DYATVHSVKA IQRAGYEAIV INSNPETVST DFSVSDKLYF EPLTLEDVLN VIDLEQPVGV IVQFGGQTAI NLAEGLAKNG VNILGTTVDD LDAAEDREVF DQVITDLNLK QPIGLTATTH SAVIKAAEKI GYPVLVRPSY VLGGKAMETV YNQEELQQYL QQNASITADH PILIDAYLEG RECEVDAICD GKDVLIPGIM EHIEHAGVHS GDSMAVYPPQ HFNDDIKRQI VTATEKLAVA LKCIGIMNIQ FIVHNHEVYI LEVNPRASRT VPFLSKITGI EMAQVATRVI LGQSLADQGF TNGLYPEPQT IHVKAPVFSF NKLANVDSYL SPEMKSTGEV MGTDTTYEKA LHKAFSGAHI QVPNDGKILF TIENGDEKEV LPLAKRFAQI GYQVFTTPQT ASHFKDNGIH IHQEISNIDE LNCLLKAGQI DLVINTMRHD YEQDSLGFQI RQSTIAQNVP LMTSLDTVNA LLRVKEDQSL EAITIK
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