Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2877 |
Symbol | |
ID | 6878881 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 2859819 |
End bp | 2861078 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642790730 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_002221268 |
Protein GI | 198284947 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.926631 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATACCT TCCACTACCG CGACCACGCC CTGTACGGCG AAGACCTCCC CTTGCAGGAA ATAGCGGCGC ATTACGGCAC GCCCTGCTAC GTCTATTCCG AAGCGGCGCT GCGTGAACGC TATCACTCCT TCAGCGCCGC CCTCGGTGAC AACACCCGGG TCTGTTATGC GGTCAAGGCC AACAGCAATC TCGGTATCCT GCGGATTTTT GCGGAGATGG GCGCGGGCTT CGATATCGTC TCCGGCGGTG AGCTGGAGCG GGTGCTGCGG GCGGGCGGCG ATGCCGGCAC CATCGTTTTT TCCGGTGTCG GCAAATCCAG CGTCGAAATC CGCGCCGCCC TCGGTGCCGG TATCTTCTGC CTCAATGTCG AGTCCGCCGC CGAACTCTGG CGCATTGCGG ACATTGCTGC CGACATGGGC AAACGTGCGC CCGTCGCCCT GCGGGTCAAC CCCGACGTGG ACCCCGGCAC CCATCGCTAC ATCGCCACGG GGCTGAAAGA GAGCAAGTTC GGCATCCCCA TGGATCAGGC CCGCCACCTC TACCTGCAAG CCGCGCAGCA CCCGGCGCTG GAGCTGAAGG GTATTGCCTG CCATATCGGC TCCCAGTTGC TGGACCTGAC GCCCCTGGGC GAGGCCGCAG GGCGGGTGCG CGCGCTGTAT GACGAGCTGG CGGCCCATGG GATTGCCCTC CAGCATCTGG ATCTGGGCGG CGGTGTGGGC ATTCGCTACC ACGACGAAAT CCCGCCCAGC CCCGCCGACT ACGCCTGGAC GCTGGATCAG GCTTTGCAAG GCGTAGCGGT ACGGCGGGTA GTGGAACTGG GCCGGGCGCT GGCGGGCAAC GCCGGCGTGC TGCTGACCAA GGTGGAATAC CTCAAGGACA ACGGCGGCAA GCAGTTCTGC GTGGTGGATG CGGCCATGAA TGACCTGTTG CGTCCCGCGC TGTACGGTGC CTGGCACGAC ATCCTGCCCC TGCACCAAAG TGTCGGAACA GGACCAGCCA TGGATGTCGT CGGCCCGGTC TGTGAAAGTG GCGACTTCCT CGCCAGAGAT CGTCCGCTAG CGGCCAAAGC CGGTGACCTG CTCGCCGTCA TGAGCGCCGG GGCCTACGGT TTCGCCATGA GCAGCAACTA CAACAGCCGC CCCCGTCCTC CTGAAGTGCT CATCAGCGGC CACCAGCACC GCCTCATTCG CCGCCGCGAG ACCCTCGCCG ATCAGTTGTC GCTGGAAGAA AACCCGCCCT CCAGGAAGTC TCCCTTATAA
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Protein sequence | MNTFHYRDHA LYGEDLPLQE IAAHYGTPCY VYSEAALRER YHSFSAALGD NTRVCYAVKA NSNLGILRIF AEMGAGFDIV SGGELERVLR AGGDAGTIVF SGVGKSSVEI RAALGAGIFC LNVESAAELW RIADIAADMG KRAPVALRVN PDVDPGTHRY IATGLKESKF GIPMDQARHL YLQAAQHPAL ELKGIACHIG SQLLDLTPLG EAAGRVRALY DELAAHGIAL QHLDLGGGVG IRYHDEIPPS PADYAWTLDQ ALQGVAVRRV VELGRALAGN AGVLLTKVEY LKDNGGKQFC VVDAAMNDLL RPALYGAWHD ILPLHQSVGT GPAMDVVGPV CESGDFLARD RPLAAKAGDL LAVMSAGAYG FAMSSNYNSR PRPPEVLISG HQHRLIRRRE TLADQLSLEE NPPSRKSPL
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