Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_2370 |
Symbol | |
ID | 6878366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 2341689 |
End bp | 2342549 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642790231 |
Product | RNA polymerase, sigma 32 subunit, RpoH |
Protein accession | YP_002220778 |
Protein GI | 198284457 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.228679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000736942 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGGAAC TTGCGATAGC CAGTAGAGAT TTGGTCAGCC CCGACGGGCT GGCGGGGTAT CTGCGTTTTG TGAACGCCCA ACCGCTGCTG CGGCCGGAAG AAGAACGTGA TCTGGCCCGG CGCCTGCGCG ATCACGGCGA TGTGGATGCG GCCAAGGATC TGGTGCTCAG CCACCTGCGC TTCGTGGTGC GGGTGGCGCG GGGTTATCGG GGATATGGAT TGCAGGAAGC CGACTTGATT CAGGAGGGCA ATATCGGCCT GATGAAGGCG GTGAAGCGTT ACGACCCGGA TCATGGCGTA CGTCTGGTCT CCTTTGCGGT GCATTGGGTC AAGGCGGAGA TTCACGAATT CATCCTGCGC AACTGGCGTA TTGTCAAGGT GGCCACCACC AAGGCGCAAC GCAAACTGTT CTTCAACCTC CGTTCCAGCC GCAGCCATAC CGGCTGGATG AGCGGTGAGG AAAGTGCCGC CATGGCGGAC GATCTGGGCG TTACCCAGGC CCAGGTACTG GAGATGGAAG GGCGGATGTC TGGTTACGAC TATTCGCTCA ACCTCGAACC GGATGAGGAA CGGGAGGGCG GACGTGCTCC GGATCTGGCG GATCCCACCG GGTCGCCCAT TGAGCAACTG GTGGAGCGGG ACTGGGATCA GCAGCAGCAC AGGGCCTTGC ATACGGCGTT GTCGGCCCTG CCCCAGAGGG ATCGCTACAT CATTGAAAAC CGCTGGCTGA GCGACGACCC CAAGACCTTG CAGGTGTTGG GCGATGAGCT GGGTGTTTCG GCAGAACGGG TGCGGCAACT GGAAAAAAGC AGTATGGGCA AGCTGCGTCA ACAAATGCTG ACGACGGCGG CGGTAGCTTG A
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Protein sequence | MKELAIASRD LVSPDGLAGY LRFVNAQPLL RPEEERDLAR RLRDHGDVDA AKDLVLSHLR FVVRVARGYR GYGLQEADLI QEGNIGLMKA VKRYDPDHGV RLVSFAVHWV KAEIHEFILR NWRIVKVATT KAQRKLFFNL RSSRSHTGWM SGEESAAMAD DLGVTQAQVL EMEGRMSGYD YSLNLEPDEE REGGRAPDLA DPTGSPIEQL VERDWDQQQH RALHTALSAL PQRDRYIIEN RWLSDDPKTL QVLGDELGVS AERVRQLEKS SMGKLRQQML TTAAVA
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