Gene Lferr_2156 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_2156 
Symbol 
ID6878147 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp2140719 
End bp2141366 
Gene Length648 bp 
Protein Length215 aa 
Translation table11 
GC content61% 
IMG OID642790015 
ProductSNARE associated Golgi protein 
Protein accessionYP_002220567 
Protein GI198284246 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000142104 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCGGACA TTCATCACCT CGTGCGGATC CTGCTGCATT TCGACCAATA CCTGACCATC 
CTTCTTCAGG AATACGGGGC GTGGGTCTAT GCCCTGTTGT TCCTGATCCT CTTTGCGGAA
ACGGGGCTGG TGATCATGCC GGTCCTGCCG GGCGACTCCA TGCTTTTTAT CTGCGGCACG
CTTGCCGGGG TGGGCGTCAT GAGCGCACCC GGGCTGCTGG GTCTGCTGGT GACGGCCGCG
GTGCTGGGTG ATGCGGTGAA TTACGCGGTG GGCCGCCGTT GGGGTGTCCA CCTCTTTGGT
GGGCGCCTGC TCAATGTCCG GCACCTGGAT ACGACCCGGC GCTTCTATGT GCGACACGGC
GGAAAAACCG TGATCATTGC CCGCTTTTTG CCGGTTATCC GAACCTTCGC GCCCTTTGTG
GCCGGTATTG CCGCCATGCC CTATCGCCGC TTCCTGGGCT TCAATCTGAC AGGAGCGATC
CTGTGGGTGG GGGGCTTGCT GGGTGCGGGA TATTTTCTCG GGCGCTTTCC TTGGGTCAAA
AGCCACCTGA GTATGGTGCT TGTCGCCATC ATCGTGGTTT CGCTGATTCC CGCCGCGCTG
GCATGGCTGC AGCAGCGTTT GCAGCCTGCC GGGACCCCTT CCCGCTAA
 
Protein sequence
MPDIHHLVRI LLHFDQYLTI LLQEYGAWVY ALLFLILFAE TGLVIMPVLP GDSMLFICGT 
LAGVGVMSAP GLLGLLVTAA VLGDAVNYAV GRRWGVHLFG GRLLNVRHLD TTRRFYVRHG
GKTVIIARFL PVIRTFAPFV AGIAAMPYRR FLGFNLTGAI LWVGGLLGAG YFLGRFPWVK
SHLSMVLVAI IVVSLIPAAL AWLQQRLQPA GTPSR