Gene Lferr_1984 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1984 
Symbol 
ID6877972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1979647 
End bp1981182 
Gene Length1536 bp 
Protein Length511 aa 
Translation table11 
GC content57% 
IMG OID642789853 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_002220408 
Protein GI198284087 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.241117 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCGCAAG AGAGCCCGGC TTCACGTCTT ACCATTACGG TCGCGGTCAT GCTGGCGGTA 
GTCATGCAGG TGCTAGACCT GACCATTGTC AACGTGGCGT TGACCTACAT GCGCGGCTCC
CTGCATGCCA ACAGCGATCA GATCACCTGG GTGCTCACCA GTTACATGGT CGCCAATGTG
ATCATCCTGC CCCTTACCGG GTTACTGGTG GAACGCTATG GTCAACGCAC CATCATGCTT
TGGAGTGTGG TCGGCTTTGT GATTTCTTCC GTGCTCTGCG GGCAATCCCA TAGTCTGGTG
GAAATCGTGC TCTGGCGTTT TCTGCAAGGC ATTTTTGGTG CTTCTCTGGC CCCCGTAGGG
CAAACCATCA TGCTCGGCGC CTACCCGTCC GACAAGCGTG GTCAGGCTAT GGCCATTCTC
GGCATGGGCA TCATGCTGGG TCCGATCCTG GGCCCTACCC TGGGTGGCTA TCTGACGGAC
ACGCTCAGTT GGCGCTGGGT GTTCTATGTG AATATTCCCT TTGGTATCCT CGCGTTCCTG
CTCATGCGGA CCATTCCCGA CGGCGGCAAG AGCACCACTC CCCGTCCAGT GGACTGGACA
GGCTTCACGC TGATGGCCGT AGGGCTGGGC AGCCTGCAAG GCATGCTGAG CCTCGGTGAT
CAGGATAACT GGTTCAGTTC GCGAACCATC ATCATCCTGA CCATCTGCGC CATTTTGGGT
ATGCTTTTTT TCGTCTGGCG CTCTCTGAGC ACACCCTATC CCGTAGTGGA CTTGCGTCTG
CTCAAAGACC GGAATCTGTC CATCGGTAGC ATGGGGATCG GCATATTCGG TCTCGCCCTC
TTCGGAACCA TGGTGATTCT GCCTATCATG CTGGAGGGTC TGATGCGCTA TGAGGCATTT
ACTGCGGGAC TGGTGATGGC ACCGCAGGGT ATCGGTGCCA TGATCGCCAT GATGTTCGCG
GGGCGCATGC TGGGACGTGG CGTCAATCCA CGCAATATCG TGTTGGTGGG CATCGTTTTC
GGAGCATTCG GCACTTATCT CACCACCCTC TATAATCTGG ATATCAGCAT GGCCTGGGTA
ATCTGGCCCA GTTTCATTCG CGGTATCGGT TTTGGCCTGG TGACAATCCC GCTCTTCACC
CTGGCTTTTA CGACCCTCGA AAAAGCCCAA CAGGCGGAGG GCTCGGGCAT TTTCAACCTG
ATGCGGACCT TGGGCGGAAG CATCGGTATC GCCATCGTTT CGACGGTGAT GACTCAGGAA
ACGCAGGTGG GCTGGAATCA AATGGGAGGG CTCATCAACC CGTTCAATCC CGCTTTTCAC
CGGTATCTTA CGGCAGCAGG CCTGACTCCG GGGCCGACGA CTTGGCATCT GCTGGGTAAC
GTCATCGTTT ATGACCAAGC GAACATGCGC GGAACGCTGG ACGCCTTTAT GCTGGTTTTT
TATGGCTTTC TGGTTTTGAT TCCGCTGATC ATGTTCCTGA AGAGGCCACC CGGCAGCTCA
GCAGGAGTGA CACAGGTAAC GCACTTCGGC GAATGA
 
Protein sequence
MAQESPASRL TITVAVMLAV VMQVLDLTIV NVALTYMRGS LHANSDQITW VLTSYMVANV 
IILPLTGLLV ERYGQRTIML WSVVGFVISS VLCGQSHSLV EIVLWRFLQG IFGASLAPVG
QTIMLGAYPS DKRGQAMAIL GMGIMLGPIL GPTLGGYLTD TLSWRWVFYV NIPFGILAFL
LMRTIPDGGK STTPRPVDWT GFTLMAVGLG SLQGMLSLGD QDNWFSSRTI IILTICAILG
MLFFVWRSLS TPYPVVDLRL LKDRNLSIGS MGIGIFGLAL FGTMVILPIM LEGLMRYEAF
TAGLVMAPQG IGAMIAMMFA GRMLGRGVNP RNIVLVGIVF GAFGTYLTTL YNLDISMAWV
IWPSFIRGIG FGLVTIPLFT LAFTTLEKAQ QAEGSGIFNL MRTLGGSIGI AIVSTVMTQE
TQVGWNQMGG LINPFNPAFH RYLTAAGLTP GPTTWHLLGN VIVYDQANMR GTLDAFMLVF
YGFLVLIPLI MFLKRPPGSS AGVTQVTHFG E