Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1935 |
Symbol | |
ID | 6877920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | - |
Start bp | 1924015 |
End bp | 1926354 |
Gene Length | 2340 bp |
Protein Length | 779 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642789805 |
Product | TonB-dependent receptor |
Protein accession | YP_002220363 |
Protein GI | 198284042 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000527842 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.699989 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCAGA TGAAATCTTC AAGAAAGTCG CTGCTTATTG CTTGGTGGGC TTCGGGCGCT TTGGGAGCGG CTTGTATTGC CTTTGCCCAT GCTGATGACC CCGGCGGGAA ACCAGCTGTC AATGTGGGTG AAGTAAATGG CCAGGCTGGC GGATCGACGA CAGATAAAAA GCATAGGGCC AAGATCAGTA TGGCGTCACC GGTTCAGTCT GTACATATTT CCCAGGCCGT TATTGAAGAG GATACGCCTC CTGGCGGCAG TATGGTGGAA GCAATTGCCG CGAATACACC CGGTTTTCAG GCACGTCGTA CCGGGACTGC GAGTGGTGCC AACCGCTATC AGATCCGTCT GAACGGCATT CAGATCGGTT TTGATGAAAC GGGTCAGGCC GAAATGAACG GGAATCAGGT GTTGATGGAT GGTATTCCAC TCAACAATCC ACTGGCATCC TATCATGGAT TTTCCACCGC CGAACTGCCT ATCGCCAGCA TGTTTTCCGG TATCAATGTA GTATATGGGC CGGGTACTGC AAAACAGCAC TGGTTTGATT CCATGGGTGG GACAATAGAT TTCAGTACTA AGTCATCCGG AGAAAAACCA TCTGTTTTTG TCGATGTCGG TGGCGGAAGT TTTAATGCAT ATAACGCGAG TACTGGTATT TCGACGGGTT CCATCGATGG ATGGAGGACC TACATTGCCG GCGGTTATAC GCGTACCGGT CAGGCTCGGG TCAGTCCATC CCTTACCGGA CCATCGCAAA GCACTGCATT TTTCCTTAAA ACCCAGAAAA GGTTTGAAGG TGGACACTTT GCGATGGGTT TTTATTTTAA CAATACCCAG GAAAATCGGC CCCATCTGAT TCCGGTGTAT CCGTTTGCTG GTGGATCCAT CAATGGCAAC GGTGTCGCAG GCCAGGCATT AAGCCAGACT ACTTCGGGAT TTTACTATAC GCCATCCAGT GATCTATGGA CAAAAAATGA GCAGTATCAT ACTTATCTTG GTTATATCAA ACTCACCAGC AATCTCACTC GTAATGTTAA ATTCAATAAT GCCCTGTGGT ATCGGGCGGG TAATCGACTC AAGGTGCGCA TAGACAATTA TCCGATGGTT CCCAAGTTGA ACACCGAGTA TTATCCGACT TCATCGGGGA ATTTTGGTTA TCGTGGTGAT TTTACTATTA CGTTGCCATG GAACAAGATT GATGTCGGTG GTTACTATCA ACAAACTACA TATGACTCAT CCTTTGCTGG TTACGGTTCT TTGGTTCCGG GTCACGAACT AGGCAGTAAC AGTCCCTTGT ATTACCGGGA CGACCACGAT CACTGGAGTG CGGCCAGCGC GTTCTTGCAG GACAAGATCA CGCCCGTATC GTTCCTATCG ATTACGCCGG GCCTGAATCT GATTAATTAT CATATTTCAG TGAATAACGT TACCTCGGTT ACGGCACCCA GTCTTTTCCC GGGTGACAGC GTCGGATCTT TCCCGACGGT GGCGGGAGAT ACGGCCAACT TTACCAAACT CGCCCCGAGC CTTGCACTGA ATGCGGCCAT CGCGCCGGAA ATACACGCCT TTGCCACCTG GTCGCAAAAC TTTCAGACCC AGATTGACAG TGCTTATGGA GAAGGAGCTT CCCATCCCGT CATTGCACCG ACGGAGCCGG CCAAAATCAA TTCTTATATG GCGGGTTTAA AATATGCGCA TGGTCCAGTT GAAGGACAGG TTGCTTTTGT ACACCAGAAG TTGACAGACC TGGCAGTGCA GATCACGCAG GCGGAATCAC AAAATATCAT TGTCGAACCG GCTAATGAAA CGATCAATGG CGTTAACTTC CTCCTCGCCT ATGGGCGCCG TCTGGGTTTC AATGCCCGTC TGATTGGTAG TATTCTGCAT GGCTCTGAAA ATACCATCAA TGCTTCTGGT GATCCGGTAA ATGGCGCCAG AGTGACGGGG CTTCCTACCT ATAACATCAA CTTCGGTATT GGCTACCGTG TGTATGCCGC GCGCACCCTC TGGAGCGCAA GGATTCTGGA CAATTATCAG TCTGCTACCT ATTTGTCCAG CGACATCAGT GCGGCACCCA CTAGTCTGAA GTTACCGTTC TCGGCGGTTA ATCTCGTAAA CTTGTCACTT TCGGCACGTA CGACGATGTT CGATCGGGAT GTCCCGGGAT TGAAGCTCAT GCGGGTATCG CTTATGTTGG ATAACCTTCT GAATCGTGAA TATAACGTAC AAGGCTACGT GTCTGCGGGT GGCAACTATG GCCCGGGCAG CGTGGGCACA ATTCTGGCCA GCCCAGGTAC GCCAAGAGCG GTTTACGCAT CTCTGACGGC GATGTTTTAG
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Protein sequence | MSQMKSSRKS LLIAWWASGA LGAACIAFAH ADDPGGKPAV NVGEVNGQAG GSTTDKKHRA KISMASPVQS VHISQAVIEE DTPPGGSMVE AIAANTPGFQ ARRTGTASGA NRYQIRLNGI QIGFDETGQA EMNGNQVLMD GIPLNNPLAS YHGFSTAELP IASMFSGINV VYGPGTAKQH WFDSMGGTID FSTKSSGEKP SVFVDVGGGS FNAYNASTGI STGSIDGWRT YIAGGYTRTG QARVSPSLTG PSQSTAFFLK TQKRFEGGHF AMGFYFNNTQ ENRPHLIPVY PFAGGSINGN GVAGQALSQT TSGFYYTPSS DLWTKNEQYH TYLGYIKLTS NLTRNVKFNN ALWYRAGNRL KVRIDNYPMV PKLNTEYYPT SSGNFGYRGD FTITLPWNKI DVGGYYQQTT YDSSFAGYGS LVPGHELGSN SPLYYRDDHD HWSAASAFLQ DKITPVSFLS ITPGLNLINY HISVNNVTSV TAPSLFPGDS VGSFPTVAGD TANFTKLAPS LALNAAIAPE IHAFATWSQN FQTQIDSAYG EGASHPVIAP TEPAKINSYM AGLKYAHGPV EGQVAFVHQK LTDLAVQITQ AESQNIIVEP ANETINGVNF LLAYGRRLGF NARLIGSILH GSENTINASG DPVNGARVTG LPTYNINFGI GYRVYAARTL WSARILDNYQ SATYLSSDIS AAPTSLKLPF SAVNLVNLSL SARTTMFDRD VPGLKLMRVS LMLDNLLNRE YNVQGYVSAG GNYGPGSVGT ILASPGTPRA VYASLTAMF
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