Gene Lferr_1935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_1935 
Symbol 
ID6877920 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp1924015 
End bp1926354 
Gene Length2340 bp 
Protein Length779 aa 
Translation table11 
GC content50% 
IMG OID642789805 
ProductTonB-dependent receptor 
Protein accessionYP_002220363 
Protein GI198284042 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000527842 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.699989 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCAGA TGAAATCTTC AAGAAAGTCG CTGCTTATTG CTTGGTGGGC TTCGGGCGCT 
TTGGGAGCGG CTTGTATTGC CTTTGCCCAT GCTGATGACC CCGGCGGGAA ACCAGCTGTC
AATGTGGGTG AAGTAAATGG CCAGGCTGGC GGATCGACGA CAGATAAAAA GCATAGGGCC
AAGATCAGTA TGGCGTCACC GGTTCAGTCT GTACATATTT CCCAGGCCGT TATTGAAGAG
GATACGCCTC CTGGCGGCAG TATGGTGGAA GCAATTGCCG CGAATACACC CGGTTTTCAG
GCACGTCGTA CCGGGACTGC GAGTGGTGCC AACCGCTATC AGATCCGTCT GAACGGCATT
CAGATCGGTT TTGATGAAAC GGGTCAGGCC GAAATGAACG GGAATCAGGT GTTGATGGAT
GGTATTCCAC TCAACAATCC ACTGGCATCC TATCATGGAT TTTCCACCGC CGAACTGCCT
ATCGCCAGCA TGTTTTCCGG TATCAATGTA GTATATGGGC CGGGTACTGC AAAACAGCAC
TGGTTTGATT CCATGGGTGG GACAATAGAT TTCAGTACTA AGTCATCCGG AGAAAAACCA
TCTGTTTTTG TCGATGTCGG TGGCGGAAGT TTTAATGCAT ATAACGCGAG TACTGGTATT
TCGACGGGTT CCATCGATGG ATGGAGGACC TACATTGCCG GCGGTTATAC GCGTACCGGT
CAGGCTCGGG TCAGTCCATC CCTTACCGGA CCATCGCAAA GCACTGCATT TTTCCTTAAA
ACCCAGAAAA GGTTTGAAGG TGGACACTTT GCGATGGGTT TTTATTTTAA CAATACCCAG
GAAAATCGGC CCCATCTGAT TCCGGTGTAT CCGTTTGCTG GTGGATCCAT CAATGGCAAC
GGTGTCGCAG GCCAGGCATT AAGCCAGACT ACTTCGGGAT TTTACTATAC GCCATCCAGT
GATCTATGGA CAAAAAATGA GCAGTATCAT ACTTATCTTG GTTATATCAA ACTCACCAGC
AATCTCACTC GTAATGTTAA ATTCAATAAT GCCCTGTGGT ATCGGGCGGG TAATCGACTC
AAGGTGCGCA TAGACAATTA TCCGATGGTT CCCAAGTTGA ACACCGAGTA TTATCCGACT
TCATCGGGGA ATTTTGGTTA TCGTGGTGAT TTTACTATTA CGTTGCCATG GAACAAGATT
GATGTCGGTG GTTACTATCA ACAAACTACA TATGACTCAT CCTTTGCTGG TTACGGTTCT
TTGGTTCCGG GTCACGAACT AGGCAGTAAC AGTCCCTTGT ATTACCGGGA CGACCACGAT
CACTGGAGTG CGGCCAGCGC GTTCTTGCAG GACAAGATCA CGCCCGTATC GTTCCTATCG
ATTACGCCGG GCCTGAATCT GATTAATTAT CATATTTCAG TGAATAACGT TACCTCGGTT
ACGGCACCCA GTCTTTTCCC GGGTGACAGC GTCGGATCTT TCCCGACGGT GGCGGGAGAT
ACGGCCAACT TTACCAAACT CGCCCCGAGC CTTGCACTGA ATGCGGCCAT CGCGCCGGAA
ATACACGCCT TTGCCACCTG GTCGCAAAAC TTTCAGACCC AGATTGACAG TGCTTATGGA
GAAGGAGCTT CCCATCCCGT CATTGCACCG ACGGAGCCGG CCAAAATCAA TTCTTATATG
GCGGGTTTAA AATATGCGCA TGGTCCAGTT GAAGGACAGG TTGCTTTTGT ACACCAGAAG
TTGACAGACC TGGCAGTGCA GATCACGCAG GCGGAATCAC AAAATATCAT TGTCGAACCG
GCTAATGAAA CGATCAATGG CGTTAACTTC CTCCTCGCCT ATGGGCGCCG TCTGGGTTTC
AATGCCCGTC TGATTGGTAG TATTCTGCAT GGCTCTGAAA ATACCATCAA TGCTTCTGGT
GATCCGGTAA ATGGCGCCAG AGTGACGGGG CTTCCTACCT ATAACATCAA CTTCGGTATT
GGCTACCGTG TGTATGCCGC GCGCACCCTC TGGAGCGCAA GGATTCTGGA CAATTATCAG
TCTGCTACCT ATTTGTCCAG CGACATCAGT GCGGCACCCA CTAGTCTGAA GTTACCGTTC
TCGGCGGTTA ATCTCGTAAA CTTGTCACTT TCGGCACGTA CGACGATGTT CGATCGGGAT
GTCCCGGGAT TGAAGCTCAT GCGGGTATCG CTTATGTTGG ATAACCTTCT GAATCGTGAA
TATAACGTAC AAGGCTACGT GTCTGCGGGT GGCAACTATG GCCCGGGCAG CGTGGGCACA
ATTCTGGCCA GCCCAGGTAC GCCAAGAGCG GTTTACGCAT CTCTGACGGC GATGTTTTAG
 
Protein sequence
MSQMKSSRKS LLIAWWASGA LGAACIAFAH ADDPGGKPAV NVGEVNGQAG GSTTDKKHRA 
KISMASPVQS VHISQAVIEE DTPPGGSMVE AIAANTPGFQ ARRTGTASGA NRYQIRLNGI
QIGFDETGQA EMNGNQVLMD GIPLNNPLAS YHGFSTAELP IASMFSGINV VYGPGTAKQH
WFDSMGGTID FSTKSSGEKP SVFVDVGGGS FNAYNASTGI STGSIDGWRT YIAGGYTRTG
QARVSPSLTG PSQSTAFFLK TQKRFEGGHF AMGFYFNNTQ ENRPHLIPVY PFAGGSINGN
GVAGQALSQT TSGFYYTPSS DLWTKNEQYH TYLGYIKLTS NLTRNVKFNN ALWYRAGNRL
KVRIDNYPMV PKLNTEYYPT SSGNFGYRGD FTITLPWNKI DVGGYYQQTT YDSSFAGYGS
LVPGHELGSN SPLYYRDDHD HWSAASAFLQ DKITPVSFLS ITPGLNLINY HISVNNVTSV
TAPSLFPGDS VGSFPTVAGD TANFTKLAPS LALNAAIAPE IHAFATWSQN FQTQIDSAYG
EGASHPVIAP TEPAKINSYM AGLKYAHGPV EGQVAFVHQK LTDLAVQITQ AESQNIIVEP
ANETINGVNF LLAYGRRLGF NARLIGSILH GSENTINASG DPVNGARVTG LPTYNINFGI
GYRVYAARTL WSARILDNYQ SATYLSSDIS AAPTSLKLPF SAVNLVNLSL SARTTMFDRD
VPGLKLMRVS LMLDNLLNRE YNVQGYVSAG GNYGPGSVGT ILASPGTPRA VYASLTAMF