Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_1879 |
Symbol | |
ID | 6877864 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 1864163 |
End bp | 1864948 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642789749 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_002220307 |
Protein GI | 198283986 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.828765 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAATC TGGACTTGCA GGGCCGGCGG GCGCTGGTCA CGGGTGGAAG TGGCGGCCTC GGACGCGCCA TTGCCGAGAC GCTGGCCACT GCCGGGGCAC AGGTGGCCGT CCATTACCGG AAAGGTCTGG ACGAAGCCGA GGCAGTGGTC GCGGCCATCC AGAAGCGGGG CGGCACGGCT CAAGCTTTTC AGGCCGATGT GGCTGATCCT GCGGCCGTAG AGAGGCTGCT GCAGGAGATC GAATCCGCCT TCGGCGGCCT GGACATTCTC GTCAACAATG CCGGCATGGA TGGCCCGCGC GCCAGCGTCG GCGATGATGA TCCTCAGGTA TGGGAAAAAG TCCTCGCCGT CGATCTCATG GGCCCCTACT ACTGCGCCCG TGCCGCCATC CCACGCATGG AGAAGGCCAA ACGCGGGGTG ATCATCAATA TCACCTCCGT GCATGAGTTT ATTCCCTGGG AAGGCTACAG CGCGTATACC AGCGCCAAGG CAGGTCTGTC CATGTTCACC AAGACCCTCG CCCAGGAAAC GGCGGATAAA GGTATCCGGG TCGTGGCCAT TGCCCCCGGT GCCATCCAGA CACCCATCAA TCAGTCGGTC TGGAGCGACC CGCAGTCCCT CAAAGACCTG AATGAGAAAA TCTCCATGGG TCGTCTCGGC AACCCCGAGG AGATTGGCAA TGTGGCGGCT TTTCTCGCCA GTGATCTGGC CAGTTACATC ACCGGCACCA CCCTTGCGGT GGATGGCGGG ATGTTGATTT ACCCCGAGTT CCGCCACGGC GGCTGA
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Protein sequence | MINLDLQGRR ALVTGGSGGL GRAIAETLAT AGAQVAVHYR KGLDEAEAVV AAIQKRGGTA QAFQADVADP AAVERLLQEI ESAFGGLDIL VNNAGMDGPR ASVGDDDPQV WEKVLAVDLM GPYYCARAAI PRMEKAKRGV IINITSVHEF IPWEGYSAYT SAKAGLSMFT KTLAQETADK GIRVVAIAPG AIQTPINQSV WSDPQSLKDL NEKISMGRLG NPEEIGNVAA FLASDLASYI TGTTLAVDGG MLIYPEFRHG G
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