| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1796 |
|---|
| Symbol | |
|---|
| ID | 6877779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 1775757 |
|---|
| End bp | 1776302 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642789665 |
|---|
| Product | isochorismatase hydrolase |
|---|
| Protein accession | YP_002220224 |
|---|
| Protein GI | 198283903 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATCG AGGCCGCGCA GAGCATCGTC ATTGCCATCG ATCTGCAGGA TCGCCTGCTC
GGTACACTGG CGCCGGCGCG GCGGGCGCCG CTCCTGGACA ATGTCTCCCG GCTGCTGAAA
TCGGCCACCG CCTTGGGGCT GCCTGTCCTC GCCACCGCCC AATATCCGCA GGGACTGGGG
CCGGCCCGAG AGGATATCTG CGTCCATGCT GCGGAGGTTC TGGAAAAGAC CGCCTTTTCC
TGCTGGCGCG GCGAGAAAAT CCGCCAGTGG CTGACGGCAC GGGATGATCG GCGTCAGGTC
ATTCTGACCG GCATGGAGTT GCATATCTGC GTGCTGCAAA CGGCGCTGGA CCTGCAGGCG
GCGGGCTGGC AACCGGTGGT AGTGGCCGAC GCCTGCGCCA GTCGTGACGC CGGGCATCAG
CAACCTGCCC TGGAGCGGCT GCGACAAGCC GGGGTTACGG TCGCCGTCGC GGAGTCCGTA
TTTTATGAAT GGCTGGGGGA CGCGATCCAC CCGGCCTTTC GCGGTCTTGC CGCCGCGTGG
CGCTAG
|
|---|
| Protein sequence | MRIEAAQSIV IAIDLQDRLL GTLAPARRAP LLDNVSRLLK SATALGLPVL ATAQYPQGLG
PAREDICVHA AEVLEKTAFS CWRGEKIRQW LTARDDRRQV ILTGMELHIC VLQTALDLQA
AGWQPVVVAD ACASRDAGHQ QPALERLRQA GVTVAVAESV FYEWLGDAIH PAFRGLAAAW
R
|
|---|
| |