| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1783 |
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| Symbol | |
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| ID | 6877765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1763032 |
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| End bp | 1764963 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642789651 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_002220211 |
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| Protein GI | 198283890 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGTA TGCTGCAACC GTTGCACTCT GGCGCGGGCA TTTTTCGTTC GTCACTGGAT
CGGGTGATCG CGCAGGCGCG TCAGGCGTTG GGCGGTCGGC AGGCGGAGGA TGGTCACTGG
TGTTTCGAGT TTGAGGCCGA TTGCACCATT CCTGCCGAAT ATATTCTGAT GCAGCATTAC
ATGGATGAGC GGGACGAGGC TCTGGAGGCC AGGATCGCCG TCTATCTGCG CGGCAAGCAG
GCGGATCACG GGGGCTGGCC CCTCTATTAC GGCGGCCATT TTGACCTGAG TGCATCGGTA
AAGGTCTATT ACGCGCTGAA ACTTGCGGGC GATGACCCCG AACTGCCCCA CATGCGGCGC
GCCCGGGAGG CGATTCTCGC CCATGGCGGA GCGGAACGCA GCAATGTGTT CACGCGCATT
ACCCTGGCGC TTTTTGCCCA GGTGCCGTGG CGGGCGGTGC CCTTCATTCC GGTGGAAATC
ATGCTGCTGC CGCGCTGGTT TCCCTTTCAT ATCTACAAGG TCGCTTCCTG GTCGCGCACG
GTGATGGTGC CCCTGTTTAT TCTGTGCAGC CTCAAGGCGC GCGCCAAAAA TCCCCTACAG
GTGCATATTC GGGAGTTGTT CCGTCGACCG CCGGATCAGA TCACGGATTA TTTCAGCCAC
GCCCGGCGAG GGATTGTGGC ATACATCTTT CTGTCTCTGG ATCGATTCTG GCGGTTGATG
GAGGGCTGGA TACCGCACGG TATCCGGCGC CGTGCCCTGA AGAAGGCGGA GGCATGGTTT
ACCGCGCGGA TCAATGGGGA AGATGGTCTG AACGGCATTT TCCCGGCCAT GGTGAACGCC
CACGAGGCCC TGGAGCTGCT CGGCTATCCG CCGGATCATG ATTATCGTCG GCAAACCGGG
GCGGCGCTGC GCAAACTGGT GGTGGAGCGG GCGAACGATG CCTATTGTCA GCCCTGTGTA
TCACCCGTCT GGGATACCTG TCTCGCGCTC CACGCCCTGC TGGAGGAGGA TGGCGAGGTC
TCTCCGGCGG TGCAAAACGG TATTCGCTGG CTCAAGAACC GGCAGATCGG CGCCGAACCC
GGCGACTGGC GGGAGTCACG CCCCCATTTG GCGGGCGGTG GCTGGGCGTT TCAATATGCC
AATCCGTATT ATCCGGATCT GGATGACACG GCGGCAGTGG GCTGGGCCCT GGCGCGGGCC
GGGCGCGCGG AGGATCGAGA CAGTATCGAG AAGGCGGCGA ACTGGCTGGC GGGCATGCAA
TCCAGAAACG GCGGTTTCGG CGCCTATGAT GTGGATAACA CCCACTACTA CCTGAACGAA
ATTCCCTTTG CTGACCACAA GGCCCTGCTG GACCCGCCGA CGGCCGATGT CACCGGGCGA
GTGGTGGCCT TTCTGGCGCA TCTGGCGCGG CCACGGGACC GCGATGTGCT GCGGCGTGCC
GTGGCTTATC TGCTGCGTGA ACAGGAGTCA TCGGGCGCCT GGTTCGGGCG TTGGGGAACC
AACTACATCT ACGGAACCTG GTCCGTGCTC ATGGCACTGG CCGAACTGAA TGATCCTTCC
CTGAAGCCCA CCATGGAACG CGCGGCGTAC TGGTTGCGCG CGGTACAGCA GGGCGACGGC
GGTTGGGGTG AAAGCAACGA TTCCTACAGT GACCCCGGTC TTGCCGGGAT GGGCCAGACC
TCTACCGCAG CGCAGACGGC TTGGGCCTGC CTGGGTCTGA TGGCGGCGGG AGACCGGGAT
AGTGTCGCCC TGCATCGTGG CATAGCCTGG CTGCAGGCGC ATCAGGAAGG GGATGGATGC
TGGCAGGCGC CATTTTTTAA CGCACCAGGA TTCCCGAAGG TTTTCTACCT GATTTATCAT
GGGTATGCGT TTTATTTCCC GCTTTGGGCA CTGGCCCGCT ACCGGAACTT GGGATGCATG
GCGCACGAAT AG
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| Protein sequence | MNRMLQPLHS GAGIFRSSLD RVIAQARQAL GGRQAEDGHW CFEFEADCTI PAEYILMQHY
MDERDEALEA RIAVYLRGKQ ADHGGWPLYY GGHFDLSASV KVYYALKLAG DDPELPHMRR
AREAILAHGG AERSNVFTRI TLALFAQVPW RAVPFIPVEI MLLPRWFPFH IYKVASWSRT
VMVPLFILCS LKARAKNPLQ VHIRELFRRP PDQITDYFSH ARRGIVAYIF LSLDRFWRLM
EGWIPHGIRR RALKKAEAWF TARINGEDGL NGIFPAMVNA HEALELLGYP PDHDYRRQTG
AALRKLVVER ANDAYCQPCV SPVWDTCLAL HALLEEDGEV SPAVQNGIRW LKNRQIGAEP
GDWRESRPHL AGGGWAFQYA NPYYPDLDDT AAVGWALARA GRAEDRDSIE KAANWLAGMQ
SRNGGFGAYD VDNTHYYLNE IPFADHKALL DPPTADVTGR VVAFLAHLAR PRDRDVLRRA
VAYLLREQES SGAWFGRWGT NYIYGTWSVL MALAELNDPS LKPTMERAAY WLRAVQQGDG
GWGESNDSYS DPGLAGMGQT STAAQTAWAC LGLMAAGDRD SVALHRGIAW LQAHQEGDGC
WQAPFFNAPG FPKVFYLIYH GYAFYFPLWA LARYRNLGCM AHE
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