| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1642 |
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| Symbol | |
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| ID | 6877622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1611959 |
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| End bp | 1613833 |
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| Gene Length | 1875 bp |
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| Protein Length | 624 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642789509 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_002220071 |
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| Protein GI | 198283750 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000759377 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGATT TGTTGAAGAG TATCCCCATG CCTGCCGAAC TGCGCCAGAT GTCGCGCAGT
GAGCAGAAGA ACGTGGCCAA GGCGGTGCGC CACTTCCTCT TGGAAACGGT CAGCCGGACG
GGTGGGCATC TCTCTTCCTG TCTGGGAGCT GTAGAGCTGA CCGTGGCGCT GCACGCCGTA
TTCAATACGC CGGACGATCG TCTGGTCTGG GATGTCGGGC ACCAGGCATA CCCCCACAAA
ATTCTGACCG GACGTGGTGC ACGTTTTCCG CAGTTGCGCA TCAGGGATGG TCTCTCCGGC
TTTCTCAAGC GGGATGAGAG CCCCTATGAC AGCTTCGGCG CCGGACACTC CAGTACCTCT
ATCAGCGCCG GTCTGGGGAT GGCGGTGGCG GCCAGGCTGG AGCATAAATC ACGGCAGGTG
GTGGCGATCA TTGGTGACGG CGCCATGACG GCAGGTCTCG CCTATGAAGC GCTGAATAAC
GGCGGGGTTT TGGATGCCGA CCTGCTGGTT GTCCTCAATG ACAACGAGAT GTCCATTTCA
CCCAATGTGG GCGCGGTATC CCGATATCTG ACGCGTATTC TCTCCGGGCG CCTCTATAAC
ACCGTACGCG AGGGTGCGGG ACAGGCATTG AGTTTCGTAC CGCCATTGCG TGAACTGGCC
AGAAAGGCGG AAGAGGGCGT GAAGGGGCTG GTGACGCCGG GGGCGCTGTT CGAAGAAATG
GGATTTCATT ATTTTGGTCC CATCGATGGC CACGATCTGG ATGCGTTGAT CCCGACTCTC
GAGAACCTGA AAAAAATCAG AGGACCACGT CTGCTTCATG TAATCACCAA AAAGGGCAAG
GGCTATGGTC CCGCCGAGCT GGATCCCTGC GGCTATCATG GAGTAACGCC CTTTAACCGC
AGCGATGGCA GGATGGCGAA GAAATCCGCC GGTGCACCGA GCTACACCCA GGTGTTCGGC
GACTGGCTCT GCGAAAAAGG CGCGGCGGAA AAACACCTGG TCGCCATTAC ACCGGCCATG
CGGGAGGGCT CCGGACTGGT GCGCTTTGAG CAACTGTTTC CCGAGCGCTA TTTTGATGTG
GGTATTGCCG AGCAGCATGC GGTGACTTTT GCAGCAGGGC TGGCCTGTGA TGGGATACAT
CCGGTAGTCG CCATCTACTC CACCTTTTTG CAGCGGGCCT ATGACCAGCT CCTGCATGAT
GTCGCCATCC AGAATCTGCC GGTACTTTTT GCCATCGACC GTGCCGGATT GGTGGGCGCC
GACGGCGCCA CCCATCAGGG CGCCTTCGAC ATCGCGTATG CCCGTTGCAT ACCCAATCTG
GTCATCATGG CCCCAAAAGA TGAGCAGGAA ATGCGCGACA TGCTCAATAC AGGCTTTGCC
TGGCAGGGAC CTGCCCTGGT GCGTTATCCG CGCGACAACG GACTGGGCGT AGCCCTGGAC
AGAGATTTAT CGCGGCAGAT CCCTGTCGGC AAGGCCGAGA TCCTGCGGAA AGGCAAGGAT
CTGGCGATTC TCGCCTTCGG TACCCGGGCG GCAGCGGCCA TGGCGGCGGG CGAAACCCTC
GACGCCACCG TCGTCAACAT GCGTTTCGTC AAGCCGCTGG ATACGGAATT GTTGACCAGC
CTAGCACAGA CCCATCGCGC ATTTTTGACG GTGGAGGAGG GCGCGCGTAT GGGCGGTGCC
GGTAGTGCCG TGGCAGAATT CCTGCTCAAT GAGGGCGTCG TGGTACCCAT GCGTCTACTC
GGTTTACCCG ACATCTTCAT CGAACAGGGC GATGCCGGCC GATGGCTGGC AGATCTGGGC
CTGGATGCCG CAGGAATCGA AAAGTCCGGC AGAGAATTGC TGACGTTGCT TGCCCCGTCA
CCAGTCCGGG CGTAG
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| Protein sequence | MSDLLKSIPM PAELRQMSRS EQKNVAKAVR HFLLETVSRT GGHLSSCLGA VELTVALHAV
FNTPDDRLVW DVGHQAYPHK ILTGRGARFP QLRIRDGLSG FLKRDESPYD SFGAGHSSTS
ISAGLGMAVA ARLEHKSRQV VAIIGDGAMT AGLAYEALNN GGVLDADLLV VLNDNEMSIS
PNVGAVSRYL TRILSGRLYN TVREGAGQAL SFVPPLRELA RKAEEGVKGL VTPGALFEEM
GFHYFGPIDG HDLDALIPTL ENLKKIRGPR LLHVITKKGK GYGPAELDPC GYHGVTPFNR
SDGRMAKKSA GAPSYTQVFG DWLCEKGAAE KHLVAITPAM REGSGLVRFE QLFPERYFDV
GIAEQHAVTF AAGLACDGIH PVVAIYSTFL QRAYDQLLHD VAIQNLPVLF AIDRAGLVGA
DGATHQGAFD IAYARCIPNL VIMAPKDEQE MRDMLNTGFA WQGPALVRYP RDNGLGVALD
RDLSRQIPVG KAEILRKGKD LAILAFGTRA AAAMAAGETL DATVVNMRFV KPLDTELLTS
LAQTHRAFLT VEEGARMGGA GSAVAEFLLN EGVVVPMRLL GLPDIFIEQG DAGRWLADLG
LDAAGIEKSG RELLTLLAPS PVRA
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