| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1428 |
|---|
| Symbol | |
|---|
| ID | 6877402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | + |
|---|
| Start bp | 1384274 |
|---|
| End bp | 1384912 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642789300 |
|---|
| Product | restriction endonuclease-like protein |
|---|
| Protein accession | YP_002219867 |
|---|
| Protein GI | 198283546 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3183] Predicted restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.352885 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA CTGCATCCGA GTTCCTCGCC TTTGCCAGAG TCGTTCAGTC TGAGGAATGG
CGCACGCTGT CGCAAAAGAA GGCGTATCGA TTCACGGTCG AGGATCGGGG GCTCAGGGTC
GTTCCTTCAA CTGGTGACGA ACGCTTGGTT TCAAACTGGG AGATTGCTCG CTTCTGTGAG
ACATACAGCC AATCAAACTC CGTCAAGACC AAGGACTACT CCAAACTCTT CAACAAATCG
TACCTTCTGC CCGTCGCTCA CTCCTTCGAT CCGAAGCGGG TTGAGTTTTC GCTCGCGGAT
GAGGTTGTGG ACACTTCCGA TCTGCACGAG GGGGCAGTGC GGTTGGTCTC CGTAAACGCC
TATGAACGAA ATGCTGAGGC GAGGCGACGG TGTGTGGAAG CTCACGGTTC AAGTTGCGTC
GTCTGTGGGT TTTCTTTCGC GCAGGTTTAC GGCGATGTTG CAGCAGGCTT CATTCACGTC
GATCATTTGT CGCCCATTGC GCTCAAGGGT GGCAATTACA AGGTCGACCC TGTGTCAGAT
TTGCTTCCTG TGTGTCCCAA CTGCCATGCA GTCATTCATC TGCGGGGCGG GTGCATGTCG
ATCGAAGAAC TGAGGGGCCA TCTCCGTGCG CGTACCTAA
|
|---|
| Protein sequence | MKFTASEFLA FARVVQSEEW RTLSQKKAYR FTVEDRGLRV VPSTGDERLV SNWEIARFCE
TYSQSNSVKT KDYSKLFNKS YLLPVAHSFD PKRVEFSLAD EVVDTSDLHE GAVRLVSVNA
YERNAEARRR CVEAHGSSCV VCGFSFAQVY GDVAAGFIHV DHLSPIALKG GNYKVDPVSD
LLPVCPNCHA VIHLRGGCMS IEELRGHLRA RT
|
|---|
| |