| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_1425 |
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| Symbol | |
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| ID | 6877399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011206 |
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| Strand | - |
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| Start bp | 1380612 |
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| End bp | 1382663 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642789297 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_002219864 |
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| Protein GI | 198283543 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.771336 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTAT ACATCGCCGA GAAGCCCAGC CTGGGCAAAG GGATCGCCGA GTATTTGCCC
GGATCGAAGA GCAAAGGGAA TGGCTTCATC CAGTGCGGAG TGGATATCGC CGTGACCTGG
TGTTTCGGCC ATATATTCGA GCAGGAAGAG CCGGACTTCT ATACGCCTGA TGATGTTCCC
ACCACGCCAA AGGGCAAGAA GAAATGGCGA TTTGAGGAAC TGCCCATATT TCCTGAGCAA
TGGAAGAAGC GGGCGAAGGA TGACGCCAAG GCCCAGATCA AGGTGATCCG GGACCTGCTC
AAGAAAGCCT CGTCTGTCGT CAATGCCGGC GACCCGGACC GAGAGGGTCA GCTGCTGGTG
GATGAGGTCC TGGAGGAACT CCGCTGGAAA GGACCAACCC TGAGGATCTG GCTGGCCGCC
CTCGATGAGC AGTCCGTGCG TAAGGCGCTG GCATCGCTCA AGGATAACCA GGACTACCAG
AATCTCCGAA ACTCAGCCGA AGCCCGTGCC CGCGCGGACT GGCTCATGGG CATGAATCTC
ACCCGTGCTT TCACCCTGCG CAACAGCGGC GCTGGGGTCG TCTCCGTGGG TCGGGTGCAG
ACGCCGACCT TGGCTCTGGT CGTGGCCCGT GATGAGAAGA TCGAGCACTT CAAGCCGAAG
GACTACTACG TTCCGCGCAT CAACGCGGGC TTCTGGGCCA CCTGGGAGTT GCGGGAGGAT
TTCGAGGGGG TCGATGCCGA AGGGTATCTC ACCGACGGGA AAGCCGCTGA CCGGCTGGTA
TCCCGGGCCA AGGCGGAAGG CAAGGCGACG GTGAAGGACT TCACCAGCGT GGAAAAGCAG
CAGCAGGCCC CATTAGGCTT CTCCCTTGCA GAGTTACAAA AGGTCTGCTC CGCCAAGCTC
GGCATGTCGG CACAAAATGT CCTTGATGCG GCCCAGGCGC TGTACGAGGA GCACAAGGCG
GCGACCTATC CCCGGACCGA TTGCCGCTAT CTACCGGAAG AACAGCATGG GGATGCCGGA
CAGATACTGT CCGGCCTAGC AAAAGCCGGA TTTGCGAATC TGGTGAAAGC CGCCGATTCT
AACCGAAAGT CGGCCATCTG GAATACGGGC AAAGTGACGG CGCACCACGC CATCATTCCG
ACCGGCTCCA TGCAGGGCAC TATGAGCCCC GCAGTGGCCA AAGTCTACGA GATCATCGTC
CGCTCCTATC TCGCGCAGTT CTATCCGCCC TATGTGTACC GGGCGATCAA GGCCCTACTG
ACTTGCACCG GCGAGGACTG GAAGGCGACT GCCAACATCC CGGTCTCCGC AGGCTGGAAA
GCCGTGTATG GGATGACCGA TGACGATAAT GATGACACCC CCGCCCAGCC GATCCCGGCG
CTCAAAAAAG GCCAGGTTCT GACCGTCCAG GATGCAGATG TCCAGGCAAA ACAGACCAAG
CCGCCGGCAC GATTTACGGA TGGGTCGCTC ATCGAGGCCA TGAGCAACAT CCATAAGGTG
GTGGAGGATG AGGCCGCCAA GGCCAAACTC AAGGAAACCT CTGGCCTGGG GACTGAGGCC
ACCAGGGCTA GCATCATCGA AACACTGCTC ACCCGGGGAT TCATGGAGCG CAAAGGCAAG
CAGATCCTCT CCACCCAGGC AGGGCGGGCG CTGGTTCACG CGCTGCCCAA AGACCTCACG
GATCCCGTCC TGACGGCACG CTGCGAAGAT GCCCTGTCAT CCGTGTCTGA GGGCCGCGTG
ACGCTACAGC AGTTCGAGGA AGCCCAGCGC AAATTCGTTT CTCGCATGAT CGAAGCAGCC
AAGGCAGCGA CCATCGCCGT TGGGCAAGCG CGGTCCGCCA CGAGCGCGCG GGGTAAGGCG
TCTACCAGAA AAACGCGGGG CGGCGGACAA AAGGCTGGCC CCGCCTGCCC GGACTGCAAA
AAACCGACCA TTACCCTGAA GACCAAGAAA GGCGACGCCT TTTTCAAGTG CGAGGGCTGC
CAGTCCTGCT GGTGGCCGGA CAAGCAGGAT GCCAAGAAGG TCGGAACGAA GTGGAGCGAG
AAAAAAACAT GA
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| Protein sequence | MKLYIAEKPS LGKGIAEYLP GSKSKGNGFI QCGVDIAVTW CFGHIFEQEE PDFYTPDDVP
TTPKGKKKWR FEELPIFPEQ WKKRAKDDAK AQIKVIRDLL KKASSVVNAG DPDREGQLLV
DEVLEELRWK GPTLRIWLAA LDEQSVRKAL ASLKDNQDYQ NLRNSAEARA RADWLMGMNL
TRAFTLRNSG AGVVSVGRVQ TPTLALVVAR DEKIEHFKPK DYYVPRINAG FWATWELRED
FEGVDAEGYL TDGKAADRLV SRAKAEGKAT VKDFTSVEKQ QQAPLGFSLA ELQKVCSAKL
GMSAQNVLDA AQALYEEHKA ATYPRTDCRY LPEEQHGDAG QILSGLAKAG FANLVKAADS
NRKSAIWNTG KVTAHHAIIP TGSMQGTMSP AVAKVYEIIV RSYLAQFYPP YVYRAIKALL
TCTGEDWKAT ANIPVSAGWK AVYGMTDDDN DDTPAQPIPA LKKGQVLTVQ DADVQAKQTK
PPARFTDGSL IEAMSNIHKV VEDEAAKAKL KETSGLGTEA TRASIIETLL TRGFMERKGK
QILSTQAGRA LVHALPKDLT DPVLTARCED ALSSVSEGRV TLQQFEEAQR KFVSRMIEAA
KAATIAVGQA RSATSARGKA STRKTRGGGQ KAGPACPDCK KPTITLKTKK GDAFFKCEGC
QSCWWPDKQD AKKVGTKWSE KKT
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