Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lferr_0971 |
Symbol | |
ID | 6876937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
Kingdom | Bacteria |
Replicon accession | NC_011206 |
Strand | + |
Start bp | 944490 |
End bp | 946517 |
Gene Length | 2028 bp |
Protein Length | 675 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642788850 |
Product | excinuclease ABC, B subunit |
Protein accession | YP_002219424 |
Protein GI | 198283103 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.91414 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.150476 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAAGC GCTTTATCCT GGAGAGCAGT TTCCCGCCGC AGGGCGACCA GCCGGAGGCT ATCCGTCTGT TGGTGAACGG CCTCGCCGCT GGTGAATATT TCCAGACCCT GTTGGGGGTG ACCGGTTCGG GCAAGACCTT CACCATGGCC AACGTCATCG CCATCACTCA CCGGCCCGCC ATCATCATGG CGCCCAACAA GACCCTGGCA GCGCAGCTCT ATGCGGAAAT GCGCGCGTTC TTTCCTCACA ATGCCGTGGA GTATTTCGTC AGTTATTACG ATTACTACCA GCCGGAGGCC TACGTTCCTT CCTCCGACAC CTTCATTGAA AAGGACGCCG CTATCAATGA TCACATCGAG CAGATGCGCC TCTCCGCCAC CAAGGCCTTG CTGGAACGGC CGGATGTCAT CATTGTGGCC ACCGTTTCGG CGATCTACGG CCTGGGTGAT CCCGCCTCCT ACCATGGCAT GATTCTGCAT CTGCGCGAAT CCTCCACCAT GGATCAGCGC GCCATCCTCA AGCGTCTGGC GGAGATGCAA TACAGCCGTA ATCCTTTGGA AATGAAGCGG GGTACCTTTC GCGTCAACGG CGATGTCATC GATATATGGC CCGCGGAAAG TGAGGACGAA GCCGTTCGGA TCGAGCTTTT TGGCGACGAA CTGGAGCGCA TCTCGCTCTT CGATCCCCTG ACCGGCAAGA CCATCACCCG TTTGCCGCGC TACACCATCT ACCCCAAAAG CCACTACGTC ACCCCGCGCG AGACCATTCT CGCGGCGCTG GACGCTATCA AAGATGAGCT TCGCGCGCGT CTGGAGGACC TGCGCCGCGC CAACAAGCTG GTCGAGGCGC AACGACTGGA GCAGCGCACC CGCTTTGATC TGGAGATGAT GGCCGAGCTG GGGTATTGCT CGGGGATCGA GAATTACTCC CGCTACCTCT CGGGACGAGT GCCCGGTCAG GCACCGCCGA CCCTGATGGA CTACCTCCCC AAGGATGCCC TGCTATTCAT GGACGAATCC CATGTCACGG TCCCACAGTT CGGGGGGATG TACAAGGGCG ACCGTTCGCG CAAGGAAACG CTGGTGGAAT ACGGGTTCCG GTTACCCTCG GCGCTGGACA ACCGGCCCTT GACGTTTCCC GAGTTCGAGT CGCTGATGCC GCAGACCGTG TTTATTTCCG CCACGCCCGG TCCCTACGAA CTGGAGCACT CCGGGCAGGT GGTGGAGCAG GTGGTGCGGC CCACCGGCCT GGTCGATCCC GCTGTGGATA TTCGTCCGGC GAAAGGGCAG GTCGATGATC TGATCAGTGA AATCAACATC GTTGTACGTA ACGGTTGGCG CATTCTGGTG ACGACGCTGA CCAAGCGGAT GGCCGAAGAT CTGACCGATT ATCTGCATGA GCTAGGCATT AAATGCCGTT ATCTGCACTC TGATATCGAA ACGGTGGAGC GGGTGGAGAT CATTCGCGAT CTGCGCGCCG GGGTGTTCGA CGTGCTGATC GGGATTAACC TGTTGCGGGA AGGCCTGGAT ATGCCGGAGG TGGCATTGGT CGCCATTCTG GATGCGGATA AGGAGGGCTT CCTGCGCTCG GAGCGGTCCC TGATTCAGAC CATCGGGCGC GCCGCGCGTA ATTTGCATGG ACGGGCCATT CTCTATGCGG ACAGCATCAC CAAATCCATG GCTCGGGCCA TAGCCGAAAC CGACCGCCGC CGGGAAAAGC AGTTGCAGTT CAATGCAGCG CACGGCATCA CCCCGCGCGG CATCGTCAAG CCGGTATCGG ACATGATTGA GGGGGTCTAT CGCCGCAATG TACAACCTGC CGCGCATGCC GCGGAAAAAA ATGCGGATTA TCGTGTGCTC CGTGATCCCC AAGCCGTTGC CAAGAAAATC AAGGAACTGG AGGAAGCGAT GTACCGACAC GCCCGCAACC TGGAGTTTGA GCAGGCAGCG GCGCTGCGGG ACGACATCAA AAAACTGGAA ACCCGCCTTC TGGGAACCGA CCTGCCGGTA TCTCTGGAGG AGGACTGA
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Protein sequence | MDKRFILESS FPPQGDQPEA IRLLVNGLAA GEYFQTLLGV TGSGKTFTMA NVIAITHRPA IIMAPNKTLA AQLYAEMRAF FPHNAVEYFV SYYDYYQPEA YVPSSDTFIE KDAAINDHIE QMRLSATKAL LERPDVIIVA TVSAIYGLGD PASYHGMILH LRESSTMDQR AILKRLAEMQ YSRNPLEMKR GTFRVNGDVI DIWPAESEDE AVRIELFGDE LERISLFDPL TGKTITRLPR YTIYPKSHYV TPRETILAAL DAIKDELRAR LEDLRRANKL VEAQRLEQRT RFDLEMMAEL GYCSGIENYS RYLSGRVPGQ APPTLMDYLP KDALLFMDES HVTVPQFGGM YKGDRSRKET LVEYGFRLPS ALDNRPLTFP EFESLMPQTV FISATPGPYE LEHSGQVVEQ VVRPTGLVDP AVDIRPAKGQ VDDLISEINI VVRNGWRILV TTLTKRMAED LTDYLHELGI KCRYLHSDIE TVERVEIIRD LRAGVFDVLI GINLLREGLD MPEVALVAIL DADKEGFLRS ERSLIQTIGR AARNLHGRAI LYADSITKSM ARAIAETDRR REKQLQFNAA HGITPRGIVK PVSDMIEGVY RRNVQPAAHA AEKNADYRVL RDPQAVAKKI KELEEAMYRH ARNLEFEQAA ALRDDIKKLE TRLLGTDLPV SLEED
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