Gene Lferr_0370 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0370 
Symbol 
ID6876321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp347719 
End bp348369 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content61% 
IMG OID642788243 
ProductLytic transglycosylase catalytic 
Protein accessionYP_002218831 
Protein GI198282510 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.149841 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGCAG CGCTGTTGCT GCTTTACGGA GGTACGGCGG AAGCCGATAT TTATGCCTAT 
ACCGATAGCA GCGGGGTGGT GCATCTTACC AATGTGCCGG CCGGGAATGA CCGGTACCGG
ATGGTCATGC GGACCCCAAA AATGGCGGTG GCCGTGGCGC GCGCCGATTT CAATCGCGTC
GCCCGGAGGC GTTATCAGGG CCTGATTCAT GCGGCCGCCA ATCGTTACCA GGTCAGCTCG
GCGCTGATCA ACGCCGTCAT CAGCGCGGAG TCCGGTTATA ATGCGGGTGC GGTATCGCCC
AAGGGCGCCG TTGGCCTGAT GCAGCTCATC CCCGCAACGG CGCTTCGCTT CGGGGTGGCG
AATGTGTTCA GTCCGACGGA CAATATCAAC GGCGGCACCG CGTATCTGGC CCATTTGCTG
CGGATCTTCA GCGGCGACCT GAAACTGGCC GTAGCCGCTT ACAATGCGGG ATCAAACGCA
GTGATCCAGG CGGGTTATCA TGTCCCGCCC TTCGCCGAAA CCCAGGCCTA CGTACCGCGG
GTGCTCGCTT ATTATCAGCA CTATCTGAAT GGCGGCGGCA CGGTATCGGG CGAGAACCGG
CAGCCCGTGG CAAATGCCGC CCCGCAGTTG ATTCAGGTAT CCAATCCGTA G
 
Protein sequence
MAAALLLLYG GTAEADIYAY TDSSGVVHLT NVPAGNDRYR MVMRTPKMAV AVARADFNRV 
ARRRYQGLIH AAANRYQVSS ALINAVISAE SGYNAGAVSP KGAVGLMQLI PATALRFGVA
NVFSPTDNIN GGTAYLAHLL RIFSGDLKLA VAAYNAGSNA VIQAGYHVPP FAETQAYVPR
VLAYYQHYLN GGGTVSGENR QPVANAAPQL IQVSNP