| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lferr_0314 |
|---|
| Symbol | |
|---|
| ID | 6876264 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 53993 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011206 |
|---|
| Strand | - |
|---|
| Start bp | 299942 |
|---|
| End bp | 301018 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642788186 |
|---|
| Product | rfaE bifunctional protein |
|---|
| Protein accession | YP_002218775 |
|---|
| Protein GI | 198282454 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0279] Phosphoheptose isomerase
[COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
|---|
| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR00441] phosphoheptose isomerase
[TIGR02199] rfaE bifunctional protein, domain II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000289381 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCA ATGACTGGAT AGGTTCTGCC CTGCACAACA GTATCACCTG TATGGGGCAC
TCCGCCGCAG CCCTTGCAGC GCCTTTTGCG CAAGCCAGTC GGCGCCTGAT CGCCACCCTG
CAGGCGGGCG GGCAGGTGCT CAGTTGCGGT AACGGCGGTT CTTCCGGAGA TGCCCAGCAC
CTCGCTTCGG AACTGGTCAA CCGCTTTGAG ACAACACGCC GCGCCCTGCC CGCCATCGCC
CTCAGCACCG ACAGCAGTGT GGTCACCGCC ATCGCCAATG ATGTCTGCTA TGAACAGATT
TTCGCCCGCC AGATCGAGGC CTTGGGCCGT CCTGGTGACT GCCTGGTCGC ATTCAGCACC
TCCGGCAACT CCACCAACGT CATCGCCGCG GCCCGGACCG CTCAACAGCG CGGCATGTGG
GTGCTGGCGC TTACCGGCAA AGAAGGCGGG CAGCTCGCGC TACTGCTGCG CCCCGTGGAC
ATTGAACTGC GGGTGCCCGA GCAGAACACG GCACGCATTC AGGAAGTCCA TCTCGTCCTC
ATTCATGCCC TCTGCAGTGG TGTGGATGCC AGCTTTGTGG GCGATGCCCC CGCATCCGTA
TTCCACACCG GCCAGGTGCT CCGCGACTGG GAGGCGTTGG ATGAAGCCTG CACCTTCCGT
CGCCCCCTGG TCTTTACCAA CGGCGTCTTC GATGTATTGC ACCGGGGCCA TGTGCAGTAT
CTCGCCGAAG CCCGCGCCGA AGGCGCCTGC CTGGTGGTAG GCGTCAACAG TGATGCCTCG
GTGCGCCGCC TCGGCAAAGG CGCGGATCGC CCGGTCAACA GCGAGGAAGA CCGTATGGCG
GTGCTCGCCG GATTACAGGC GGTGGATTTC GTCACGGTGT TTGACGACGA CACCCCGCTG
AAGTTGATCC AACATCTCCA ACCCGACGTA CTGATCAAAG GTGGCGACTG GCCGATAGAG
CGCATCGTCG GTGCCGATTG GGTGCAGGCC GGAGGCGGCC GGGTACTCAG CATTCCTTTT
CGCCACGAAC GGAGCACCAC CGCGCTCCTG CAAAAAATCC GAGGGAGCCA GCCATGA
|
|---|
| Protein sequence | MTGNDWIGSA LHNSITCMGH SAAALAAPFA QASRRLIATL QAGGQVLSCG NGGSSGDAQH
LASELVNRFE TTRRALPAIA LSTDSSVVTA IANDVCYEQI FARQIEALGR PGDCLVAFST
SGNSTNVIAA ARTAQQRGMW VLALTGKEGG QLALLLRPVD IELRVPEQNT ARIQEVHLVL
IHALCSGVDA SFVGDAPASV FHTGQVLRDW EALDEACTFR RPLVFTNGVF DVLHRGHVQY
LAEARAEGAC LVVGVNSDAS VRRLGKGADR PVNSEEDRMA VLAGLQAVDF VTVFDDDTPL
KLIQHLQPDV LIKGGDWPIE RIVGADWVQA GGGRVLSIPF RHERSTTALL QKIRGSQP
|
|---|
| |