Gene Lferr_0235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLferr_0235 
Symbol 
ID6876185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidithiobacillus ferrooxidans ATCC 53993 
KingdomBacteria 
Replicon accessionNC_011206 
Strand
Start bp219948 
End bp225098 
Gene Length5151 bp 
Protein Length1716 aa 
Translation table11 
GC content62% 
IMG OID642788111 
Productdomain of unknown function DUF1738 
Protein accessionYP_002218700 
Protein GI198282379 
COG category[L] Replication, recombination and repair 
COG ID[COG4227] Antirestriction protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGTCC CCGCCTCACC CCGTTCTGGG AACAACACCG ATAGGAAAGA TCCCCGTCTT 
GAGCTTGCCG ACAGACTGAT TGAACAGATC GAGGCAGGAA CTGCCTCCTG GCAAAGGCCC
TGGGAAGCCG GCGATGTGTT GGCCCCGGTC AATGCAGTCA CAGGCAAGCC TTACAGCGGG
GTGAACTACC AAAATCTCAT GATGTTCTCT CCGGACCCGT CCGATCCACG TTGGTGTACC
TACAAGCAGG CCCGGGAGCA GGGCTGGCAG GTGCGCAAGG GTGAGCATGG GATTTCCATC
GAAAAGTGGT CGCGTTACGA GCACAAACGC ACCAATGAGG AAATAGAGAG GCTTCGGGCG
CAGGGCGCCC AGAACATCGA GCCCGTGGAG GAACGGCTTG GTGTCCGTTA CTACACAGTG
TTTCACGCAT CACAGATAGA CGGCATTCCC CCGCTGGAGC GGTCCCCGCG TCTGGAGATC
GAGGGAAAAC CCGATGATCG GCTGCCGAAG CTGGCGGAGA ATATGGGCCT GGAGGTGGTA
CATACTGGCG GCCGGGCCTT TTATCGCCCC TCTGAGGACC GGGTATACAT GCCGCCGGTA
GAGCGCTTCG AGCGCGCGAC GGGGCACGAC ACCACCCTTC TGCATGAGCT TTCCCATGGG
ACAGGCCATG CATCCCGGCT GAATCGAGAG ATCCGGAATC CTTTTGGCAG CCCGAAATAT
GCTGTCGAAG AGTTGCGGGC GGAGATGTCA GCGGCCATGA CCGCGGCGAG TTTGGGGATC
GGCTTCGATC CCGCATCCCA GGACCTGGAA GAAGGCCGCG AGATGGGCAA TTCCGCAGCC
TATCTCGCCT CATGGCTCAA AGCCCTGCCG GAAAAAGAGC GCAAGCAGAT CCTGATGCAG
ACCATCAAGG ATGCCCAGGG GATCAGCGAC TATCTGATCG AACGGACGCC GGAATTGCTG
GTGGAGCAGG AGCGACCAAC CGTCTCCCGT GGCGATTACG TCCGGTACAG GAATGAGATT
GGGCAAGAGG TTGAGGGCGT GGTGCTTGAC GCCGCCCAGC CCGGCGAAGC GACGCGCTTG
AGAGCCATCT ATCGGTGGCC CAACGGCACC CCCGGTATGG ACGGGGCGGA CCACATCGCG
CCCACGGTAC TGCCGGACGG CTTGGTGGAA CACATCCCGG GCGCCGTCAC CCCCGGTCCG
GATCTGGACG CCATCGATCC GCAGACCGAT GCGTACCAAC GCACCATGGG CATGGACGAT
TCGCGTAACC GGGCGGGCCG CGCCGTGCTC ATGGCGGTCG AAACCGCGCG CGGGCAGCCG
GAGCAGTCGG TAGCCTTGCA GGCGGCAGCC CTGCAGGCGG CGGCCTTGCC GGAACGCGCC
CTGGACCCTG AGCTGATTTC GTTTCTTGAA AACCGCAACC GCGTCCGGCA AGGCGAACAC
CCGGACTTTG CCGGCCTGAG CGATCCCGTC GCCAATGCCG AAGCCTTCGT TGAGCGGCAA
GGCCGTACCT ATCCCCAGCG TTCCGCGCAA TGGGCCAGAG CGCTACAGGA AAGCCCGGTG
GCTTATGGTG AGGCCGTGGG CCTCAGTCCG GCCACGGTGG GTCTCCTCGC GGCTCAGCTG
AATGTGGGGG TGCAGCGCAT GGAACGGCCC CAGCTCGGCG ATCTCGTGCG TTTTGAGCCG
CATGAGCCTG GCGTAACGAA CAGTCCCTTC TCGGGACGGA TCATCGCGGC CCTGGATACT
TCTGGCGGCG ATATCCGCTA TCACCTGCGG GCGGAGACGG GGCTGGATCA GAGTATGGAG
GCCCGTGTCT ATGGCCGGGA CGGACAGTTC CGCGAGATCG CTCTGGAGCA GGCCGTGGGA
TTCGACCGGG CTCTCGCTCC AGAGGCAGAG AAAGCCCCCC AGATTCAGGT CGGGGACTTC
GTGATCACAC GGAGAAATCA ATTCGGGGCA GACTGGAATA CTCCCTCCAT CGTTACCCGC
ATCGATGACT CCGAAGTCCG GCTGCAGGAC CTCTACCGCT CCGGTCGGGA ATGGAAAGTC
ACCCCCGCCG TCCGAACCAT GGCTCGCGAG GGTTTCGACG CGGCTCTCCG TCATCAGATC
AGTGGCGTGG TGCCGCCCGA GATCGCGTCA GAAAAGCTGG ATTCTGCCTC CCGCAGGGAT
CGCATCGCGA GTACGGTCAA TGCCTTTGAT GCCGAACACA GCCTGGCATA TGGCCAGCCG
CCGGAGCCTG TGGCGAGGAT TCCCAACGAG GTGCGGCCAT TCCTTGGGGG CCAACAGGCG
TCGGTGACAG CCCAGTTGCT CCGCAGCAGC GAGGAAAAAG GCTTTTTCTC GGACAAGATG
CGGGAGTTAC AGGAGATCAT CCGGCAGATG CCGGCGACCT ATGAAACCGA CGGACTCCCC
GATGCGGAGC GCCCGGTCTC CCTGCGCTAT TTTGGTTCCA ATGGTGCCCA GTGGTTCATC
CTTGAGAAGG ATCGCGGAGA TCCGGCCAAT GAGGGGAACG GCTTCCCGAA CCAGACGCAA
GCCTTTGGTC TGGCGGATCT GGGTATGGGC CATCCTGAAC TGGGATACAT CGATATTCCG
GAGATCACCC GTGCCGGGGC GGAGCTCGAT TATCACTTTG AGCCCCGGAC CCTTTTGGAG
GTGAAGCTGG AGCACTACCC AGACCTGCTT CCGCCAGAGC ATCGCCCAGT GGATCTGCGC
AAGGAACAGG CGCTTCAGGA GTACCAGGCG TTTTACGCCC AGTTGCCACA GCGGGAAGAG
AAACTGGTGA CGGCAGTCCG CGAGCGCTCT GGGCGCCTTG CTCCGGCGGA TTTTCGGGGC
TTCTCCGACA TGATGCGGGA TTTCAGCAAG GGCGTGGATG ATACCTTTGG GATCATCCGG
GAGGGAGAAA ACCGGGGAGC GTCGGCCCCG GAATTGCGCC TGACGCAGGC ATTTGCTCCG
GAAGAGATCT CCGATCTGCC CGCCGTCCAA ACCGCCCGTG ACCGGGCAAG ACGGGTTGGC
GAGCGATTTC ACGATCTGGA CCGGGAAATC CGGGACACCT TCAAGGCGCG GCTCAGGGAG
CATGGCAAGG CACTACTGGA GTCCGGCAGC CTGCGCGAAC CCCGGGAAAT CGCGCAGGCG
ACCTACTGGA AGCACGGGAT TGAGGCAAGT CCGGACAGCC CGATGATCGG AAAAGTGGTC
GGGGCGATTC AGGACAAGGA TCTCAAAACC CTACTGGGAA TGATTGGCCA CAACAGCCAA
AACCCGGGAT CGGAAGAGGT ATTTACGCAC ATTACGGGTG TAAAACTGGG CAAGACCCAA
AAAGAACGGG GCGCACAGTT GCTGGAGTGG GCCGGTCCTG AAAAGGCGCA GGCCCTGCAG
GAAAGCAATG CGCTGGCGGA GCGGGAACGG GAAGCTCGGG GCTTGCGGGA TGGCATGGTC
AGCGCCTGGG CGGATCTGAA GGGCCTGCGC GTGGATGTCG GTGGCCAGGT GGTGAATGGA
CAGGAGTATG TGACACTGAA AGTCGCGGGC GGCCAGGATC GCATTGCTTC CGGCAAGGAG
GGCGCGGCAA CCACGTACCA TCTGATCAAT GACCGGGGCG AGTATTCCCG CGTCAAGGAC
GTGCGGTTCA CGGCCTTTGC CAAGCGGGTT TTGGCCATGG ACGCCGATGG CAATGTGCGC
AACGCCATGG AAAAGGCGGG CATTGTGCAG GGGATTGCGC CGGAAGGGGT TACCCCGAAA
CCGGCTGCCG ATCTTCAGAA AGAGCAAAAA GCACCAGAAG CTCCCGGGAA GAACGCGTAC
GAGCAAAAAA TCGAGGCGCG CAAGGAGCGA TATCTTGCCC TTTCTGAAAA GACCCGGGCG
CGGGCGAAAG CCCGCATGGA GCAGGCCAGG CGCATGGCAG ACGCCATTCC TTTTGGTCAG
CCGATCCTGG TTGGTCACCA CAGCGAAAAG CGCGATCGAA AGTTTCGTGA GCGCATCCAC
CAGAACTTTG GCAAAGGCTT CGACCTGCTG GAGAAGGCAG CGTATTACGA ACGCCGCGCC
AAGGGCGTCA ACGACTACGC CATCAGCGCG GACGATCCGG ATGCCGTGAA AAAACTCAGG
GAACGGGTGG AGAATCTGAA GTCTTCCCAG GAGCGCATGA AGGCGGCGAA CGCCGCCATC
CGCAAACATC AGAAGGATGG CCCCGAGGCG CAGCAGGCGG CCCTGGAGCG TCTGGGTTTC
CAGCCAGACC AGGCAAAAGC CATTTTGACC CCGGATGTCA TGGGGACCGT GGGTTTTGCG
TCGTACTCCC TCAGCAACAA TAACGCCAAC ATCCGGCGGC TGGAAGAGCG TATTCAGATC
CTGGAAAAGG CCCAGGCCCT GAAGGACCGT GAGACACCGT ATGCCTGGGG AACGGTTCGG
GAGAACAGGG AGATCAACCG CATCCAGTTC CGGTTCGAGG ACAAGCCTGA CGAAGAGGTC
CGCAATCTCA TGAAGTCGAG CGGCTTTCGA TGGGCGCCTT CCGAGGGCGC CTGGCAACGG
CAGTGGACGG GCAATGCCGT ATATGCCGCG CGGGATGTCA TCAAAAAGCT GGACGCGCTG
ATGCCGCCTG AGCAGACGGT GGCAGCACCA GAACCGGCCC AACGGCTCGA CACTGTGCCA
GTTTCCCAGA GCCCTGATGT GAGCCCAGGT ATTACTGTCC GCGACCCGAG CGCCGCGCTG
TCTGCGGCCA TCAAGGACCG CGACGGCGAC TGGTACAACC TTTCCGTGCA GGAAAACGAT
GGCCGTCTGG TGGGGACCTT GCAGTGGCGC GATGCGGAAA CGGGTCTGGT GGAGACGATG
CCGTCCGGTG TTTTTCAGCC TGACGTGAAT TATGGGGTGG TGGCCAGGTT TGAGCGGGAG
TCTGGGGAAC TCCTGGCGGT TGGCCTTTCC CGTGGTCTGG ATGGCGGTGT GGATATGAAG
GTCTTTTCCC AGTCGAGGGA CGCCGCAGTC TTCGCCTGGC AGCGAATTCA TGAGTACCCG
GGACATCTGA GGGCCAATGA AGCGCTCCAG AAGGTCCCGG ATCACCCGGA GGGTAAGGTG
ATTGAGCAGG CTTTGGGCGT GGACCCGAAG ACGCTCAACC CGGCGCGTGT TGCCCCCAAG
GCCTCAGCCC GCCGGCCGGA GCAGCAGAAG CAGCAGGGTG TGGAGATATA G
 
Protein sequence
MSVPASPRSG NNTDRKDPRL ELADRLIEQI EAGTASWQRP WEAGDVLAPV NAVTGKPYSG 
VNYQNLMMFS PDPSDPRWCT YKQAREQGWQ VRKGEHGISI EKWSRYEHKR TNEEIERLRA
QGAQNIEPVE ERLGVRYYTV FHASQIDGIP PLERSPRLEI EGKPDDRLPK LAENMGLEVV
HTGGRAFYRP SEDRVYMPPV ERFERATGHD TTLLHELSHG TGHASRLNRE IRNPFGSPKY
AVEELRAEMS AAMTAASLGI GFDPASQDLE EGREMGNSAA YLASWLKALP EKERKQILMQ
TIKDAQGISD YLIERTPELL VEQERPTVSR GDYVRYRNEI GQEVEGVVLD AAQPGEATRL
RAIYRWPNGT PGMDGADHIA PTVLPDGLVE HIPGAVTPGP DLDAIDPQTD AYQRTMGMDD
SRNRAGRAVL MAVETARGQP EQSVALQAAA LQAAALPERA LDPELISFLE NRNRVRQGEH
PDFAGLSDPV ANAEAFVERQ GRTYPQRSAQ WARALQESPV AYGEAVGLSP ATVGLLAAQL
NVGVQRMERP QLGDLVRFEP HEPGVTNSPF SGRIIAALDT SGGDIRYHLR AETGLDQSME
ARVYGRDGQF REIALEQAVG FDRALAPEAE KAPQIQVGDF VITRRNQFGA DWNTPSIVTR
IDDSEVRLQD LYRSGREWKV TPAVRTMARE GFDAALRHQI SGVVPPEIAS EKLDSASRRD
RIASTVNAFD AEHSLAYGQP PEPVARIPNE VRPFLGGQQA SVTAQLLRSS EEKGFFSDKM
RELQEIIRQM PATYETDGLP DAERPVSLRY FGSNGAQWFI LEKDRGDPAN EGNGFPNQTQ
AFGLADLGMG HPELGYIDIP EITRAGAELD YHFEPRTLLE VKLEHYPDLL PPEHRPVDLR
KEQALQEYQA FYAQLPQREE KLVTAVRERS GRLAPADFRG FSDMMRDFSK GVDDTFGIIR
EGENRGASAP ELRLTQAFAP EEISDLPAVQ TARDRARRVG ERFHDLDREI RDTFKARLRE
HGKALLESGS LREPREIAQA TYWKHGIEAS PDSPMIGKVV GAIQDKDLKT LLGMIGHNSQ
NPGSEEVFTH ITGVKLGKTQ KERGAQLLEW AGPEKAQALQ ESNALAERER EARGLRDGMV
SAWADLKGLR VDVGGQVVNG QEYVTLKVAG GQDRIASGKE GAATTYHLIN DRGEYSRVKD
VRFTAFAKRV LAMDADGNVR NAMEKAGIVQ GIAPEGVTPK PAADLQKEQK APEAPGKNAY
EQKIEARKER YLALSEKTRA RAKARMEQAR RMADAIPFGQ PILVGHHSEK RDRKFRERIH
QNFGKGFDLL EKAAYYERRA KGVNDYAISA DDPDAVKKLR ERVENLKSSQ ERMKAANAAI
RKHQKDGPEA QQAALERLGF QPDQAKAILT PDVMGTVGFA SYSLSNNNAN IRRLEERIQI
LEKAQALKDR ETPYAWGTVR ENREINRIQF RFEDKPDEEV RNLMKSSGFR WAPSEGAWQR
QWTGNAVYAA RDVIKKLDAL MPPEQTVAAP EPAQRLDTVP VSQSPDVSPG ITVRDPSAAL
SAAIKDRDGD WYNLSVQEND GRLVGTLQWR DAETGLVETM PSGVFQPDVN YGVVARFERE
SGELLAVGLS RGLDGGVDMK VFSQSRDAAV FAWQRIHEYP GHLRANEALQ KVPDHPEGKV
IEQALGVDPK TLNPARVAPK ASARRPEQQK QQGVEI