| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4384 |
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| Symbol | trmE |
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| ID | 6161102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4904459 |
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| End bp | 4905898 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641667161 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001793400 |
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| Protein GI | 171061051 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000178893 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGCCGC GCCACCATGA ACCCATCGCC GCCATCGCCA CTGCTCCCGG ACGGGGTGCG
GTGGGCATCG TGCGGGTGTC CGGGCGAGGC CTGACGGCGC TGGCAACCGC GCTGGTCGGC
CGTCCGCTGC GGCCCCGTGT CGCCAGTTAC GGGCCGTTCC TGGATCGCCA GGGCGGCGCG
ATCGACCGCG GCCTGGCGCT GCACTTTCCG GCGCCGCACA GCTACACCGG CGAAGACGTG
CTCGAACTGC AGGCCCATGG CGGCCCGGTG GTGCTGCAGT TGCTGCTCGC CCGCTGCCTG
GAGGCAGCCG GCGAGATCGG CACAGACGGC AGGCCCAGAC TACCCGGCCT GCGGCTGGCG
CAGCCGGGCG AGTTCACCGA GCGCGCCTAC CTCAACGACA AGCTCGACCT GGCGCAGGCC
GAGGCGGTGG CCGATCTGAT CGACGCCAGT ACCGAAGCCG CGGCGCGCAG CGCGGCACGC
TCGCTGTCGG GTGATTTTTC GCGCCAGATC ACGCACTTGC GCGACGGCCT GATCGAGTTG
CGCGCGCTGG TCGAGGCCAC GCTCGATTTC CCCGAAGAAG AGATCGATTT CCTGCAGCGT
GCCGACGCGC ACGGCCGGCT GGCCCGGCTG GCCGAACGGC TGGCCGGCCT GCTCGACACC
GCACGCCAGG GCGCGCTGCT GCGCGAAGGC CTGCGGGTGG TGATCGCCGG CCAGCCCAAT
GCCGGCAAGA GCTCGCTGCT CAACGCGCTG GCCGGCGCCG AGCTGGCGAT CGTCACGCCG
ATTCCCGGCA CCACCCGCGA CAAGATCAGC GAGACGATCC AGATCGAGGG CGTGCCGGTG
CACGTGATCG ACACCGCCGG CCTGCGCAGC GACGAGCAGG CCGGCGACGA GGTCGAGCGC
ATCGGCATCA GCCGCAGCTG GCAGGCCATC GCCGAGGCCG ACGCGGTGCT GCTGCTGCAC
GACCTGACGC GCGAGCACGA GCCGGCCTAC AGCGCCGCCG ACACCGCGAT CGCGCAGCGC
CTGCCCGCCG ATGTCGGCCT GATCCATGTA CACAACAAGG CCGACGCCGC CCCCGAACAG
GCTGCCCGGG TGGCCGCCCG CCTGGCAGCC CGGCAAGCCG GCGACGCGGC CGGCGTGGTG
CTGAGCGCCC GCACGCACGA CGGCATCGAC GCCCTGCGCG CCGCGCTGCT GGCGCGGGCC
GGCTGGCACG CCGCGCCGGA GGGCGTGTTC ATCGCCCGCG AGCGCCATGT GCGTGCCCTG
CGTGCCGCCG CCACCCACGT CACCGCGGCG CAGGGCTGGG CCGAACAATC CGACAGCGCG
CTCGACCTGC TGGCCGAGGA GCTGCGGTCG GCCCACGACG CGCTGGCCGA GATCACCGGC
AGCTACAGCA GCGACGACCT GCTGGGCGAC ATCTTCGGGC GCTTCTGCAT CGGCAAATAG
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| Protein sequence | MLPRHHEPIA AIATAPGRGA VGIVRVSGRG LTALATALVG RPLRPRVASY GPFLDRQGGA
IDRGLALHFP APHSYTGEDV LELQAHGGPV VLQLLLARCL EAAGEIGTDG RPRLPGLRLA
QPGEFTERAY LNDKLDLAQA EAVADLIDAS TEAAARSAAR SLSGDFSRQI THLRDGLIEL
RALVEATLDF PEEEIDFLQR ADAHGRLARL AERLAGLLDT ARQGALLREG LRVVIAGQPN
AGKSSLLNAL AGAELAIVTP IPGTTRDKIS ETIQIEGVPV HVIDTAGLRS DEQAGDEVER
IGISRSWQAI AEADAVLLLH DLTREHEPAY SAADTAIAQR LPADVGLIHV HNKADAAPEQ
AARVAARLAA RQAGDAAGVV LSARTHDGID ALRAALLARA GWHAAPEGVF IARERHVRAL
RAAATHVTAA QGWAEQSDSA LDLLAEELRS AHDALAEITG SYSSDDLLGD IFGRFCIGK
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