| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4330 |
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| Symbol | |
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| ID | 6164056 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4844317 |
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| End bp | 4846827 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641667107 |
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| Product | glycoside hydrolase family 3 protein |
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| Protein accession | YP_001793346 |
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| Protein GI | 171060997 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.248566 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACGA ACAAGATCGA AGAACTGCTC GACGCGATGA CGCTCGACGA GCAGGCCAGC
CTGCTGGCCG GCGCCGACTT CTGGACCACC GTGACCATCC CTCGGCTGGG CGTGCCGGCC
TTCAAGGTGA CCGACGGTCC GAACGGCGCG CGCGGCGGCA TCTTCAAGGA CGGGCCCAAG
ACGGCGTGTT TCCCCGTCGG CATCGGCCTG GCCGCGACCT GGAATCCGAC GCTGATCGAA
GAGACAGGCG CCGCGCTCGG CGTCGAGGCC AAGCTGAAGG GGGCGCGCGT GCTGCTGGCG
CCTACCGTGA ACCTGCAGCG CACGGTGTTC AACGGCCGCA ACTTCGAGTG CCATTCGGAG
GATCCGTGGC TGGCGTCGGA GATGGCGGTG GCCTATGTCA AGGGCGTGCA GTCGCAGGGC
GTGGCCGCGA CGATCAAACA CTTCGTCGGC AACGAGAGCG AATACCAGCG TATGAGCATG
AGCTCGGAGA TCCCCGAGCG CGCGCTGCGC GAGCTCTACC TCGTGCCCTT CGAGCGCGCC
GTCAAGGAGG CCGGCGTGAT GGCCGTGATG ACCGGCTACA ACCGCGTCGA CGGCACCTTC
ATGGCCGACC ACCGCCGCCT CGTCACCGAA GTGCTGCGCG ATGAATGGGG CTTCGACGGC
CTGGTGATGA CCGACTGGAT GGCCAGCCAC GACACCGTCT ACAGCGTGCT GGCCGGCTGT
GATCTGGAGA TGCCCGGCCC GACGCGCGAA CGTGGTGCCA AGGTGGTCGC CGCGGTGCAG
GACGGGCGGC TGCTCGCCTC GTCGGTGCGC GCCTGTGCCC GCCGCGTGCT GCAGTTGGCC
GATCGCCTGG GCTGCTTCGC CGACCCGGTG ATCCCGGCCG AACGCGCCGA CGACCTGCCC
GCGCACCGCG CGCTGATCCG CCGCCTCGGC GCCGAGGGCG CGGTGCTGCT GAAGAACGAG
GCCGGCGCGT TGCCCGGCGC CGCAGGCGCC TTGTTGCCAC TCTCGCCCAA AGCCGGCCAG
ACCGTCGCGC TGATCGGCCG CGCCGCCACG GTGCCGCAGA TCATGGGCGG CGGCAGCGCC
AACGTGAACG CGTTTTACCG CGTCGCACCG GCCGACGCGC TGCGTGCGGC CTGCCCGGGT
GTCAACTTCA GTCACCACAT CGGCGCCGAC ATCCACCGCT ACACGCCGGT GCTGGCGCAG
CCGATGACGC TCGACCTCTA CGCCAGCGCC GACCTCAGCG GCCCGGTGGT GGCGACGCAG
ACCGTGCCCA ACAGCGAGGC CCAATGGATC GGCACGCTGC CGCCAGGCAT CGCGCCGGAT
CAGCACTACT CGGCGCGCAC CACGCTGCGC TACGTGGCCG ATGCACACGG CGAACACGCC
TTCTCGCTGA TCGTCGCCGG CGTCGCCCGC GCCACGCTCA ACGGCGAGCC GGTGCTCGAC
GCCTGGACCG GCTGGCAGCG TGGCGAGACC TACTTCACCT TCGGCTGCGA CGAGGTCATC
CATCGCCGCA CGATGCACGC CGGCGAAGTC GCCGAACTGG TGGTCGAGTT CAGCAGCGTC
ATGCCGCTGG CACCTGGTGA CGAAGGCCCG CACGGCTTCG CGGCGCTGCG CATCGGCGCG
GCGCGTGTGC TCGGTGAGGC CGACATCGCG GCGGCGGTCG AGGCTGCGCG CAACGCGGAT
GTCGCGATCG TCTTCGCCGG CCTCAACGCC GAGTGGGACA ACGAGGGCCT GGACCGCACA
GGCATCACGT TGCCGCACGG CCAGAACGAG CTGATCGCGC GTGTGGCCGC GGCCAACCCG
CGCACCGTCG TCGTGCTGCA GACCGGCTCG CCGGTGACGC TGCCGTGGCT GGCGGACGTC
GGCGCCGTGC TGCAGGCCTG GTACCCCGGC CAGGAATGCG GCAACGCGAT CGCCGACGTG
CTGCTCGGCG CCGCCGAACC CGGTGGCCGC CTGCCGCAGA CCTGGCCGCT GCGGCTCGAC
AACAGCGTGG CGATCGGCAA TCCCGAGGTC TACCCCGGCG TCGACGGCCA CGTGCGCTAC
GACGAAGGCG TGTTCATCGG CTACCGCCAT TACGAGCAGC GCGGCCTGGC CACGCAGTTC
GCCTTCGGCC ACGGGCTGTC GTACACCACC TTCGTGTTCG AGGGGCTGAC GCTCGACCGC
AGCACGCTGC AGCCCGGCGA CACGCTGACC GCGACGCTGA CGGTGCGCAA CACCGGCCCG
CGCGCCGGCA GCGAGGTGGT GCAGCTCTAC GTGCATGACG AGGCCAGCTC GCTGGCCCGC
CCGCCGCAGG AGCTCAAGGC TTTTGCCAAG GTCACGCTGC AGCCGGGGGA GGCTCGGCGC
GTGAGCCTGT CGCTGGGCAT GCGCGCCTTT GCCGCCTACG ACGAAGCACG TGCGGCCTGG
ATCGCCGAAG CCGGGCGTTT CGAGCTGCGC GCAGGCGCCT CGTCGGCCGA TCTGCGCCAG
CGCGCCGGCG TGACGCTGGC GGCTGACTGG GTCGAGCGCG TGGCCGGTTG A
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| Protein sequence | MKTNKIEELL DAMTLDEQAS LLAGADFWTT VTIPRLGVPA FKVTDGPNGA RGGIFKDGPK
TACFPVGIGL AATWNPTLIE ETGAALGVEA KLKGARVLLA PTVNLQRTVF NGRNFECHSE
DPWLASEMAV AYVKGVQSQG VAATIKHFVG NESEYQRMSM SSEIPERALR ELYLVPFERA
VKEAGVMAVM TGYNRVDGTF MADHRRLVTE VLRDEWGFDG LVMTDWMASH DTVYSVLAGC
DLEMPGPTRE RGAKVVAAVQ DGRLLASSVR ACARRVLQLA DRLGCFADPV IPAERADDLP
AHRALIRRLG AEGAVLLKNE AGALPGAAGA LLPLSPKAGQ TVALIGRAAT VPQIMGGGSA
NVNAFYRVAP ADALRAACPG VNFSHHIGAD IHRYTPVLAQ PMTLDLYASA DLSGPVVATQ
TVPNSEAQWI GTLPPGIAPD QHYSARTTLR YVADAHGEHA FSLIVAGVAR ATLNGEPVLD
AWTGWQRGET YFTFGCDEVI HRRTMHAGEV AELVVEFSSV MPLAPGDEGP HGFAALRIGA
ARVLGEADIA AAVEAARNAD VAIVFAGLNA EWDNEGLDRT GITLPHGQNE LIARVAAANP
RTVVVLQTGS PVTLPWLADV GAVLQAWYPG QECGNAIADV LLGAAEPGGR LPQTWPLRLD
NSVAIGNPEV YPGVDGHVRY DEGVFIGYRH YEQRGLATQF AFGHGLSYTT FVFEGLTLDR
STLQPGDTLT ATLTVRNTGP RAGSEVVQLY VHDEASSLAR PPQELKAFAK VTLQPGEARR
VSLSLGMRAF AAYDEARAAW IAEAGRFELR AGASSADLRQ RAGVTLAADW VERVAG
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