| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4317 |
|---|
| Symbol | |
|---|
| ID | 6163100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4829200 |
|---|
| End bp | 4830231 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641667094 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001793333 |
|---|
| Protein GI | 171060984 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.362014 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCC ATTCGATGCT CGCCGCCGCC ACGCTGCTCG GCGCCCTGCT GGCGCCGCTT
TCTGCTGCCG CACAGGGTGA GCTGGTGGTG TATTGCACCG TGCAGGAAGA GTGGTGCCGG
CCGATGGTCG CCGCCTTCGA GAAGAGCACT GGCATCAAGG TCTCGATGAC ACGCAAGAGC
TCGGGCGAGT TCTATGCCCA GCTCAAGGCC GAGGCCGCCA ACCCGCGCGG CGACATCTGG
TGGGGCGGCA CCGGCGACCC GCACATGCAG GCCGCCGAAG AAGGCCTGAC CGAGCCCTAC
AAGTCGCCCA AGCTGGCCGA ACTGCAGGAC TGGGCGGTGC GCCAGGCCGA GCAGTCGAAG
TACCGCACGG TGGGCATCTA CGCCGGCGCC CTCGGCTACA GCTACAACAC CGACGAGCTG
AAGAAACGGG GTCTGCCCGA ACCCAAGTGC TGGGCCGACC TCACCACGCC CGCGTTCAAG
GACGAGGTGC AGGTGGCGAA CCCGAACTCG TCGGGCACCT CGTACACCAT GCTCGCCACG
CTGGTGCAGA TCATGGGCGA GGCCAAGGCC TTCGACTACC TGAAGGCGCT GCACAAGAAC
GTCAACCAGT ACACCAAGAG CGGCGCCGCA CCGGCGCGCG CTGCGGCCAC CGGCGAGAGC
CTGGTCGGCA TCACCTTCCA GCACGACGCG GTGATCCAGG CGCTGGGCGG CGCGCCGGTC
AAGATCGTCT CGCCCTGCGA AGGCACCGGC TACGAGATCG GCAGCATGAG CATCGTCAAG
GGCGCCAAGA ACATGGCCAA CGCCAAGCTC TGGTACGACT GGGCGCTGTC GGTCGAAGGC
CAGGCGATCG GCGCGGCCAA CAAGGTGAGC TACCAGGTGC CGTCCAACAA GGCCGCGCCG
GTGCCCGCCG CCGCGCCCAA GCTGGCCGAT ATCAAGCTGA TCAACTACGA CTTCGCCAAG
TACGGCTCGT CAGCCGAACG CAAGCGCCTG CTGGGCAAGT GGGACGCTGA AGTCTCGACG
CTGCCCAAGT GA
|
|---|
| Protein sequence | MKTHSMLAAA TLLGALLAPL SAAAQGELVV YCTVQEEWCR PMVAAFEKST GIKVSMTRKS
SGEFYAQLKA EAANPRGDIW WGGTGDPHMQ AAEEGLTEPY KSPKLAELQD WAVRQAEQSK
YRTVGIYAGA LGYSYNTDEL KKRGLPEPKC WADLTTPAFK DEVQVANPNS SGTSYTMLAT
LVQIMGEAKA FDYLKALHKN VNQYTKSGAA PARAAATGES LVGITFQHDA VIQALGGAPV
KIVSPCEGTG YEIGSMSIVK GAKNMANAKL WYDWALSVEG QAIGAANKVS YQVPSNKAAP
VPAAAPKLAD IKLINYDFAK YGSSAERKRL LGKWDAEVST LPK
|
|---|
| |