| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4302 |
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| Symbol | |
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| ID | 6162085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4812429 |
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| End bp | 4813760 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641667079 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_001793318 |
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| Protein GI | 171060969 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGACAC CCGTGAGCAC GTCCACCCTG ACCGCACTCG GCGGTTTCGG CAACGAATTC
GCCACCGAGG CCATCGCCGG CGCGCTGCCG CAGGGCCGCA ACAGCCCGCA GCGCGCGCCG
CTGGGCCTCT ATCCCGAGCT GGTCTCGGGC ACCGCCTTCA CGGCGCCGCG CGCGGCCAAC
CGGCGGGTCT GGCTGTATCG CCGCCAGCCC TCGGTGGTGA CCGGCGGCTA CCAGCCCTAT
GCGTCACCCC ATGGGCAGCC GCTGTGGACC AGCGGCGCCG CCGCTGGCGT GGTGACGCCG
CCCGATCCGC TGCGCTGGCA TCCGTTCCCG CTGCCCGACG CGCCGACCGA TTTCGTCGAC
GGCCTGCGCA CCGTGGTCGC CAACGGCGAC GTCGACGCCC AGGTCGGCAT GGGCGCGCTG
ATCTACGCCG CCAACACCTC GATGACGCAG CGCGCGCTGG TCAACGCCGA CGGCGAGATG
CTGCTGATCC CGCAGTTCGG CCGGCTCGTC ATCACCACCG AACAGGGCGT GCTGAACGTG
GCGCCGGGCC AGATCGCGCT GCTGCCGCGC GGCCTGGCCT TCAAGGTGGC GCTGCCCGAC
GGTGCCTCGC GCGGCTACGC CTGCGAGAAC TACGGCGCCC ATTTCCGGCT GCCCGAGCTG
GGCCCGATCG GCTCCAACGG CCTGGCCAAC GCACGCGATT TCCACAGCCC GCAGGCGGCG
TTCGAGGCCG AGAACCTGCC GCACCAGATC GTCAAGAAGT TCGGCGGCCG GCTCTGGCAG
GCGCTGCAGC CGGCCACGCC GTTCAACGTG GTGGCCTGGC ACGGCAACCT GGCGCCGTGC
GTGTACGACA CCGCGCACTT CATGACGATC GGCTCGATCA GCCACGACCA CCCCGATCCG
AGCATCTTCA CCGTGCTGAC CAGCCCGAGC GACACGCCCG GCGTGGCCAA CTGCGACTTC
GTGATCTTCC CGCCGCGCTG GCTGGTGGCC GAGGACACCT TCCGCCCGCC CTGGTACCAC
CGCAACGTGA TGAGCGAGTT CATGGGCCTG GTCACCGGCG AATACGACGC CAAGCCCGAA
GGCTTCAAGC CCGGCGGCGC CAGCCTGCAC AACGCGATGG TGCCGCACGG GCCCGACGCC
GAGGCCTTCG AGCGCGCCAC GCAGGCCGAG CTGCAGCCGC AGAAACTCGA CAACACCCTG
GCCTTCATGC TCGAGAGCCG CCTGCGCTTC GTGCCCACCG CCTGGGCGAT GCAGGGCAGC
GGCACGCTCG AGGCCCGTTA CGCCGACTGC TGGCAAGGCC TGGCCGACCC GCTGCAAGGG
CAACCCGCAT GA
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| Protein sequence | MSTPVSTSTL TALGGFGNEF ATEAIAGALP QGRNSPQRAP LGLYPELVSG TAFTAPRAAN
RRVWLYRRQP SVVTGGYQPY ASPHGQPLWT SGAAAGVVTP PDPLRWHPFP LPDAPTDFVD
GLRTVVANGD VDAQVGMGAL IYAANTSMTQ RALVNADGEM LLIPQFGRLV ITTEQGVLNV
APGQIALLPR GLAFKVALPD GASRGYACEN YGAHFRLPEL GPIGSNGLAN ARDFHSPQAA
FEAENLPHQI VKKFGGRLWQ ALQPATPFNV VAWHGNLAPC VYDTAHFMTI GSISHDHPDP
SIFTVLTSPS DTPGVANCDF VIFPPRWLVA EDTFRPPWYH RNVMSEFMGL VTGEYDAKPE
GFKPGGASLH NAMVPHGPDA EAFERATQAE LQPQKLDNTL AFMLESRLRF VPTAWAMQGS
GTLEARYADC WQGLADPLQG QPA
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