| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4279 |
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| Symbol | |
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| ID | 6160626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4787414 |
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| End bp | 4788661 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641667056 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001793295 |
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| Protein GI | 171060946 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCC AACGCCCCGT GATGGCCGAC GCCGCCCCAG CCTGGCCGAT GCGGCGTCGA
CTCGCGCTCG CCGCCGTCGG CCTGAGCGCG CTGGTGGCGT CGCTGGCCGG TGCGCCCGCG
CGGGCGCAGG CCGAGATCCG CATCGCCCAC ATCCACAGCC TGACCGGCCC GCTCGAGGCC
TACGGCAAGC AGACCTCGAC CGGCTTCATG ATGGGCCTCG ACTACGCCAC CGGCGGCACC
ATGACGGTGG CCGGCAAGAA GCTGGTGGTG ATCGAGAAGG ACGACCAGGG CCAGCCCGAG
GTCGGCCGGC GCCAGCTGGT GGCCGCCTAC GAAGACGACA AGGCCGACCT CGCGGTCGGC
CCGACCAGCT CGGGCGTGGC GCTGGCGCTG CTGCCGGTGG CCGAGCAGTT CAGGAAGATC
CTGGTGGTCG AGCCGGCGGT GGCCGACTCG ATCACCGGCG AGAAGTGGAA CCGCTACGTC
TTCCGCACCG GCCGCAACTC CAGCCAGGAC GCGGTCTCGA ACGCGATGGC GCTCGACCGC
GAGGGCGTCA GCATCGCCAC GCTGGCGCAG GACTACGCCT TCGGCCGCGA CGGCGTGAAG
GCCTTCCGCG ACGCCATCAA GAAGGCGCGC ATCGTGCACG AGGAGTTCCT GCCCGCCCGC
ACCACCGACT TCAACGCCGG CGCCCAGCGC CTGATCGATG CGCTGAAAGA CAAGCCCGGC
CGCAAGATCA TCTGGGTGCT GTGGGCCGGC GGTGGCAACC CGTTCACGAT CGCCGACCTC
GACTTGAAGC GCCACGGCAT CGAGATCGCC ACCGGCGGCA ACATCCTGCC GGCGATGATC
GGCTTCAAGC GCTTTCCGGG CATGGAGGGC GCCACCTACT ACTACTTCGG CATCCCGAAG
AATCCGGTCA ACGAATGGCT GGTGGCGAAC CACTACAAGC TCTATCGCAC GCCGCCGGAC
TTCTTCACCG CGGGTGGCAT GAGTGCGGCG CTCGCGGTGG TCGAGGCGCT GCGCAAGACC
GGCGGCGAGA CCGACACCGC GCGGCTGATC CGCGCGATGG AAGGCATGAG CTTCGACACG
CCGAAGGGGC GCATGCAGTT TCGGGTCGAG GATCACCAGG CGATGCAGAC GATGTATCAC
TTTCGCATCA AGGCGGATCC GGCGATGCCT TGGGGGGTGC CCGAATTGGT GCGCGAGATT
CGTGCGGGGG AGATGGCGGT GCCGATTCGG AATCAGCGGC AGCAGTGA
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| Protein sequence | MPTQRPVMAD AAPAWPMRRR LALAAVGLSA LVASLAGAPA RAQAEIRIAH IHSLTGPLEA
YGKQTSTGFM MGLDYATGGT MTVAGKKLVV IEKDDQGQPE VGRRQLVAAY EDDKADLAVG
PTSSGVALAL LPVAEQFRKI LVVEPAVADS ITGEKWNRYV FRTGRNSSQD AVSNAMALDR
EGVSIATLAQ DYAFGRDGVK AFRDAIKKAR IVHEEFLPAR TTDFNAGAQR LIDALKDKPG
RKIIWVLWAG GGNPFTIADL DLKRHGIEIA TGGNILPAMI GFKRFPGMEG ATYYYFGIPK
NPVNEWLVAN HYKLYRTPPD FFTAGGMSAA LAVVEALRKT GGETDTARLI RAMEGMSFDT
PKGRMQFRVE DHQAMQTMYH FRIKADPAMP WGVPELVREI RAGEMAVPIR NQRQQ
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