| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4270 |
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| Symbol | |
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| ID | 6162246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4778928 |
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| End bp | 4779677 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641667047 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001793286 |
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| Protein GI | 171060937 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCTCA AAGACAAGGT TGCCGTCATC ACCGGTGGTG CCGGCCTCAA CGGCCTCGGC
TTTGCCACCG CGCGCCTGAT GGCGGCGCAG GGCGCCCGCG TCGTGGTGCT CGACCTGGCC
GGCGCCGAGC CGGCCGCAGC GGCGGCGCAA CTCGGCGCCG GCCACCTCGG CTGGGTGGCC
GACGTGACCG ACAAGGCCTC GTGCGACGCC GCCGCGGCCG CCGTGCTGCA GGCCTACGGC
CGCATCGACG TGCTGGTCAA CAACGCCGGC ATCACGCAAC CGGCCAAGAC GCTCGACATC
ACCGGCGCCG ACTACGACCG CATCCTCGAC GTCAGCCTGC GCGGCACGCT GTACATGTCG
CAGGCCGTGC TGCCGGCCAT GCAGCAGCAG AAGAGCGGCT CGATCGTCTG CATCTCGTCG
GTCTCGGCGC AGCGCGGCGG CGGCATCCTC GGCGGACCGC ACTACTCGGC CGCCAAGGCC
GGCGTGCTGG GCCTGGCGCG CGCCATGGCG CGCGAGTTCG GCCCCGACGG CATCCGCATC
AACTGCATCA CGCCCGGCCT GATCGGCACC GACATCATCA AGGGCAAGCT CACCGAAGAG
AAGAAGGCCG AGATCGCCGA GACGATCCCT CTCGCCCGCC TGGGCCGTGC CGACGACATC
GGCGGCGCCT GCGTCTTTCT GGCCAGCGAC CTCTCGCTCT ATTGCACCGG CATCACGCTC
GACGTGAACG GCGGCATGCT GATCCATTGA
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| Protein sequence | MLLKDKVAVI TGGAGLNGLG FATARLMAAQ GARVVVLDLA GAEPAAAAAQ LGAGHLGWVA
DVTDKASCDA AAAAVLQAYG RIDVLVNNAG ITQPAKTLDI TGADYDRILD VSLRGTLYMS
QAVLPAMQQQ KSGSIVCISS VSAQRGGGIL GGPHYSAAKA GVLGLARAMA REFGPDGIRI
NCITPGLIGT DIIKGKLTEE KKAEIAETIP LARLGRADDI GGACVFLASD LSLYCTGITL
DVNGGMLIH
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