Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4257 |
Symbol | |
ID | 6163653 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4764629 |
End bp | 4767652 |
Gene Length | 3024 bp |
Protein Length | 1007 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641667034 |
Product | ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
Protein accession | YP_001793273 |
Protein GI | 171060924 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
TIGRFAM ID | [TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGACC TGCAACGCCA GGATATGTCC CTGTTTTCAG ACCTTGCCGA AGCCCGTGTC AACGGTGCCT CCCGCGGCGC GGCGCGCGCC TTGCCGGAAC AACCTATCAG CGCCGAAGTG CTGATCGAGA AATATGCCAA GGGCGACGAA TCGAGCATCG AGCAGGTGCG CCGCCGTGTC GCCGCCGCGC TCGCCTCGGT CGAGGCACCC GAGGCGCGCG AGCTCTGGAC CGAGCGTTTC CTGGCCGCCC AGGAGCGCGG TTTCGTGCCC GCCGGGCGCA TCGCCTCGGC CGCCGGCACC ACGCTCAGCG CCACGCTGAT CAACTGCTTC GTGCAGCCGG TGGGCGACTC GATCGCCGAG CCCGAAGAAG GCTTCCCGGG CATCTACACC GCGCTGACCG AAGCGGCCGA AACGATGCGC CGCGGTGGCG GCGTCGGCTA CGACTTCAGC CGCATCCGCC CCTACGGCGC CTGGGTCGGC AGCACGCAGA GCCACGCCAG CGGCCCGGTC AGCTACATGC GCGTGTTCGA CCGCAGCTGC GAGACGGTCG AATCCGCCGG CAGCCGCCGC GGCGCCCAGA TGGGCGTGCT GCGCTGCGAT CACCCGGACG TCGAGGCCTT CATCCACGCC AAGGACAAGG GCGACCTGAA GAACTTCAAC ATCTCGGTCG GCGTGACCGA CGTCTTCATG AAGGCGGTCG AGGCCGACAC CGACGTCGAC CTGGTGCACA AGGCCGAGCC CGGCGAGAAG CAGAAAGCCG CCGGCGCCCG CCAGCGCGCC GATGGCCTGT GGGTCTACCG CAGCGTGCGC GCGCGCGACC TGTGGGACCA GATCATGCGG TCGACCTACG ACCACGCCGA ACCGGGCGTG CTGTTCCTGG ACCGCATCAA CCAGGACAAC AACCTCAGTT ACTGCGAGAC CATCGCGGCG ACCAACCCGT GTGCCGAACA ACCACTGCCG CCCTACGGCT GCTGCTGCCT CGGCTCGGTC GACCTGACGC ACTTCGTGCA GCGCCCGTTC GAGTCCGACG CCTCGTTCGA CGACGCCGCC TTCGCCGAGG TCTGCGCGAC CGCCACCCGC ATGCTCGACA ACGTGCTCGA CGCCACCGTC TGGCCGTTGC CCGCGCAGCA GCAGGAGGCC GCCAACAAGC GCCGCGTCGG CCTCGGTTTC ACCGGCCTGG GCGACGCGCT GATCATGCTC GGCCTGCGCT ACGACACGCC GGCCGCGCGC GCGATGGCCA CGCACATCAG CGAGGTCATG CGCGACGCCG CCTACATCGC GTCGAGCGAC CTGGCGCAGG AGCGCGGTGC GTTCCCGCTC TTCAACGCCG ATCTCTACCT GAGTGGCAAC AGCTTCGCCT CGCGCCTGCC CGCGGCCGTC AAGGAGCACA TCCGCGTCAA CGGCCTGCGC AACTCGCACC TGCTGTCGAT CGCGCCCACC GGCACCATCA GCCTGGCCTT TGCCGACAAC GCCTCCAACG GCATCGAGCC GCCGTTCAGC TGGACCTACA CCCGCAAGAA GCGCGAGGCC GACGGCACGT TCAAGGAGTT CGCGGTCGAG GACCACGCCT GGCGCCTGTA CCGCCACCTC AAGGGCGCCG ACGCGCCGCT GACCGACGCC TTCGTCACCG CGCTCGAGAT GAGCGCCGAG GCGCACGAAT CGATGGTGGC GGCGGTCGCG CCGTGCATCG ACACCTCGAT CAGCAAGACC GTCAACGTGC CGGCCGACTA CCCGTACGAG GACTTCCAGG GCCTCTACAT GGCGGCCTGG AAATCCGGCC TCAAGGGCCT GGCGACGTAT CGTCCGAACA GCGTGCTGGG CTCGGTGCTG AGCGTCACAC CCACCGTGCC CGTCGTCGCC GAAACCGCCG CCACGCCGCA GCCGTTGACC GTGCCCGTCA GCCTGGGCAC GCCGCTCGAC GCCGGCAGCG CCAACCAGCG CCTGCGTGTC GACCGCCTGC CGCAGCCGGT GCTCGCCTCG CTGCGCTGGC CCAGCCGGCC GGACCTGAGC AACGGCAACC CGGCCTGGAG CTACATGATC CAGCACCCGC ACGGCGACTT CGCGCTGTTC GTCGGCGAGC TGCCGGCCGA GGCCGGCCCC GACGCCGGCC TGTTCGACAA GACCCTGCCG TTCGAGGTCT GGGTCAACGG CGCCGAACAG CCGCGCGGCC TGGGCGCGCT GGCCAAGACG CTGTCGATGG ACATGCGTGC CAACGACCCG AGCTGGCTCA AGCTCAAGCT CGACGCGCTC GCCACCGTCG CCGAAGAGCG CGCCTTCGAC ATGCCCTTCC CGCCCACCGG CGAGAAGCGC CTGTTCCCCG GCGTGGTGGC GGCCACCGCG GCGGTGATCC GCTGGCGCTG CGAGCAGCTC GGCGCGCTGC AGGAAGGCGG CCCGACCCCC GTGCTCGACG CCATGTTCAG CCGCGACGAG CCGCGCACCG GCACCGACGG CACGCTGGCC TGGGCGGTCG ACATCCACAA CCCGGCCACC GGCGAGGAGT TCACCCTCAC GCTCAAGGAA GTGACGCTGC CCACGCCCGA AGGTGGCCAC GTCACGCGGC CCTGCGCGAT CGGCTTCGCC GGCAACTACC CGCGTGCGCT CGACGGCCTG GCGCGCCTGC TGTCGCTCGA CATGCGCGTG ATCGACCCGG CCTGGATCGG CATGAAGCTG CGCAAGCTGC TCAACGTCGG CGAACCGCTC GGCCACTTCA TGGCGCCGAT CCCGGGCCAG AAACGCCAGC AGATCTGGCC CAGCACCGTC GCCTACGTGG CGCGGCTGGT GATCCACCGC TACGCGATGC TGGGCGTGCT GACCGAAGAA GGCGAGCCCG TCAGCGCGAT GGGCGTGCTG GCCGCACCGC AACGCGCGGT TGCCGCCGGG GCGTCCTCGG GCGCTGCCGT CAGCGGCGCC GCCAGCGCCC CGATGGCCGG CTCGCCCTGC CCGGAGTGCG GCAACGCCAC GATGATCCAC AAGGACGGGT GCGATTTCTG CACCAGCTGT GGCTTCGTGG GTGCGTGTGG TTGA
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Protein sequence | MNDLQRQDMS LFSDLAEARV NGASRGAARA LPEQPISAEV LIEKYAKGDE SSIEQVRRRV AAALASVEAP EARELWTERF LAAQERGFVP AGRIASAAGT TLSATLINCF VQPVGDSIAE PEEGFPGIYT ALTEAAETMR RGGGVGYDFS RIRPYGAWVG STQSHASGPV SYMRVFDRSC ETVESAGSRR GAQMGVLRCD HPDVEAFIHA KDKGDLKNFN ISVGVTDVFM KAVEADTDVD LVHKAEPGEK QKAAGARQRA DGLWVYRSVR ARDLWDQIMR STYDHAEPGV LFLDRINQDN NLSYCETIAA TNPCAEQPLP PYGCCCLGSV DLTHFVQRPF ESDASFDDAA FAEVCATATR MLDNVLDATV WPLPAQQQEA ANKRRVGLGF TGLGDALIML GLRYDTPAAR AMATHISEVM RDAAYIASSD LAQERGAFPL FNADLYLSGN SFASRLPAAV KEHIRVNGLR NSHLLSIAPT GTISLAFADN ASNGIEPPFS WTYTRKKREA DGTFKEFAVE DHAWRLYRHL KGADAPLTDA FVTALEMSAE AHESMVAAVA PCIDTSISKT VNVPADYPYE DFQGLYMAAW KSGLKGLATY RPNSVLGSVL SVTPTVPVVA ETAATPQPLT VPVSLGTPLD AGSANQRLRV DRLPQPVLAS LRWPSRPDLS NGNPAWSYMI QHPHGDFALF VGELPAEAGP DAGLFDKTLP FEVWVNGAEQ PRGLGALAKT LSMDMRANDP SWLKLKLDAL ATVAEERAFD MPFPPTGEKR LFPGVVAATA AVIRWRCEQL GALQEGGPTP VLDAMFSRDE PRTGTDGTLA WAVDIHNPAT GEEFTLTLKE VTLPTPEGGH VTRPCAIGFA GNYPRALDGL ARLLSLDMRV IDPAWIGMKL RKLLNVGEPL GHFMAPIPGQ KRQQIWPSTV AYVARLVIHR YAMLGVLTEE GEPVSAMGVL AAPQRAVAAG ASSGAAVSGA ASAPMAGSPC PECGNATMIH KDGCDFCTSC GFVGACG
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