Gene Lcho_4236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4236 
Symbol 
ID6160903 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp4746093 
End bp4746710 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content72% 
IMG OID641667013 
Producthypothetical protein 
Protein accessionYP_001793252 
Protein GI171060903 
COG category[R] General function prediction only 
COG ID[COG2945] Predicted hydrolase of the alpha/beta superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.258628 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTCCA AGACCCAGAA ACGCCAGATC GACGGCCCGG TCGGCACGAT CGAATGCGCG 
ATCGATCTGC CCGCCGACCG CACCGAACCG CGCGGCGTGG CGGTGGTGGC GCACCCGCAT 
CCGCTGTTCG GCGGCACGCT CGACAACAAG GTGGTGCAGA CGCTCGCGCG CGCGCTGGTG 
CTGCTGGGCT ACGAGACGGT GCGCTTCAAC TTCCGCGGCG TCGGCGCCAC CGCCGGCACG 
CATGACGAAG GCCGCGGCGA GAGCGACGAC ATGCTGGCCG TGATCGAGGC CTTCCGCCGC 
CCCGGCCTGC CGCTGGTGCT GGGCGGCTTC TCGTTCGGCG GCTACGTCAC CACGCTGGCC 
GCGGCGCGCC TCGCCGGCGA GGCCGCCGCC GAACGCATCG TGCTGATCGG CCCGTCGACC 
CAGCGCGCCA CGCCCGCGCC GGTGCCGGCC GACACGCTGG TGATCCACGG CGAGACCGAC 
GACGTGGTGC CGCTCGCCTC CACCCTCGAC TGGGCCCGGC CGCAGCAGCT GCCGGTGATC 
GTGATGCCCG GCGTCGGGCA CTTCTTCCAT GGCCAGCTGC CGCAACTGCG CCAGCTCATC 
GTGCGCAGCT GGCACTGA
 
Protein sequence
MNSKTQKRQI DGPVGTIECA IDLPADRTEP RGVAVVAHPH PLFGGTLDNK VVQTLARALV 
LLGYETVRFN FRGVGATAGT HDEGRGESDD MLAVIEAFRR PGLPLVLGGF SFGGYVTTLA 
AARLAGEAAA ERIVLIGPST QRATPAPVPA DTLVIHGETD DVVPLASTLD WARPQQLPVI 
VMPGVGHFFH GQLPQLRQLI VRSWH