| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4210 |
|---|
| Symbol | |
|---|
| ID | 6163802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4717920 |
|---|
| End bp | 4721252 |
|---|
| Gene Length | 3333 bp |
|---|
| Protein Length | 1110 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641666987 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001793226 |
|---|
| Protein GI | 171060877 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.000219546 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTGC ACACCTGGGT CACCCGCCTG ATCTGGCTGT GCATGGCGCC GCTGCTGCTG
CTGGCGGCCT ACCTGGCGAT CGACCGCGTG CGCGGTGTCC AGGCCGAGCG GGACCTGGTG
GCCGAGAACC TGTCGCAGGA GCTCGCCGCC TCGATCGACC AGGGCCTGCA GGCCCGCATC
GGCGCGCTGC AGATGCTGGC GCAGTCGCCG CTGGCCGACG ACCCGTCGCG CTGGCGCGAG
CTCTACCAGG AGGCGCAGGG TTTCCGGCAG AGCTTCGGCA GCCACGTGGT GCTGGCCGAC
CGCTCGCTGC GGATGCGCTT CACGACCCGC TCGCCGTTCG GCGCCGAGCT GCCGATGCTG
CCGCGCCCGA AGGGCCAGGC GGCCGCACCC AAGGCGCTCG AGACCGGGCT GCCGGCGGTC
GGCGACACCT TCATCGGGCC GATCGCCAAG GCGCCGCTGG TCGCCATCGC GGTGCCGGCG
CTGCGCGGCG GCCAGGTCAC CGCGCTGCTG CTGACCACCT TCGAGGCCAG CCAGTACCAG
GCCCAGCTCG ATCAGGTCCG GCTGCCGGCG CACTGGTCGC TGTCGCTGCT CGACGGCAAG
GGCGACGTCA TCGCCCGCCG CGCGCCGGCC GAGCCGCCGG CGCAGCGGGT GGTCGATGCC
GAAGGCCGTT TTGCCGTGCG CTCGGCGGTG GCGCCGTGGT CGGTGGTGCT CGAGATCCCG
CGCGACGTCT ACCGCGCGCC GCTGCAGGCC GCGGCCCTGA CGCTGGCGAT CGCGATCCTG
GGCGCCAGCC TGGCCGGGGT GCTCGGCGGC ATGCTGGCCA GCCGCCGCCT GGGCCGGGCG
GTCGATTCGC TGGCGCAGCC GCCGCAGCCG GGCACGCCGC CGTCGTCGAT CCGAGAGATC
GCCGCGGCCC GGCAGCTGAT CGACGAGACC GCGCGCCGCA GCCAGGCCGC CCAGGACAGC
CTGCGTGACA GCGAGCGGCG CTTTCGCCGG CTGTTCCAGG AGGCGCCGCT GCCGCTGGCG
CTGGTCAGCC GCGACGCTCG CGTGACCGAC ATCAACCGCC GCTTCGTGCA GCTGTTCGGC
TACACCCTGG CCGAGATCCC GACCCTCGCG CACTGGTGGC AGCTGGCCTA TCCGGATGCG
ACCTACCGCG CCGCCGTGAT CGCGCGCTGG AACGCCGCGC GGGTCGCCGT GGCGCAGACC
CGCGGCGACA TCGCGCCGCA GGAATACCAC GTCACCTGCC GCGACGGCAG CGTGCGCACC
CTGCTGATCG CCGGCATCGA CCAGGACGAC GGCTTCATGG CCACGTTCTT CGACATCACC
GAGATCCGGC GCGCCGAGCA GCACGTGCGC GCCCTCAATG CCGACCTCGA ACGCCGGGTC
GCCGACCGCA CCGGCGAACT GCTGCAGGCG CGCGAGGCGG CCGAAGCGGC CAACCGCGCC
AAGAGCGCCT TCCTGGCCAA CATGAGCCAC GAGATCCGCA CGCCGATGAA CGCCATCGTC
GGGCTCGCCC ACCTGCTGCG CCGCGATGCG CACGAGCCGG TGGCGGCGCA GCGGCTGGGC
CAGATGATCG ACGCGGCGGG CCACCTGCTG CAGGTCATCA ACGACATCCT CGACCTGTCG
AAGATCGAGG CCGGCAAGCT CCAGCTCGAG CAGCTGCCGT TCTCGCTCCA GGCCCTGCTG
GCGCGCAACT GCGCCCTGGT GGCCGATCGC GCACGCGCCA AGGGGCTGGC CGTGGCGATC
GAGGTCGACG GCGTGCCCGA CGCCCTGTCC GGCGACCCGA CCCGCCTGTC GCAGGCCCTG
CTCAACCTGC TAGGCAACGC CGTCAAGTTC ACCGAGCAGG GCTCGATCGT GTTGCGCGCC
GAGTGCGTGG CGCGCGGCAC CGACGATCAC CTGACGGTGC GGTTCCGGGT GCGCGACACC
GGCATCGGCA TCGCGCCCGA CAAGCTCGAC CAGCTGTTCG CGCCCTTCAT GCAGGCCGAC
GCCTCGACCA CCCGCCGATT CGGCGGCACC GGCCTCGGTC TGGCCATCAC GCAGCGCCTG
GCCGCGACGA TGGGCGGCGA GGTCGGCGTG CGCAGCGAGC CCGGCCGCGG CAGCGAGTTC
TGGTTCACCG CGCAGCTGCG CGAGGGCGCC GCGGCCCGCC CGGCGGGCGC TGCCGTCGAA
GCCCTCACCC ACCCCTTCGG CGACTCGTTC GCGGACCCCC GCGAGGCCCT GGAGCGCCTG
CGTTCGTGTT GTGCGGGGGC GCGGCTGCTG CTGGTGGAGG ACAACCCCGT GAACCAGGAC
GTCGCCCTCG AACTGCTGCG CGCCGCCGGC TTCGCGGTCG ACGTCGCCAG CAACGGCGTC
GAGGCGCTGG CGCAGGTGCA CGGCCGCAGC CACGACCTGA TCCTGATGGA CATGCAGATG
CCCGAGATGG ACGGCCTGGA GGCGACGCGC CTGATCCGCG CGCTGCCCGG ATGCGCCACC
GTGCCGATCC TGGCCATGAC CGCCAACGCC TTCGGCGACG ACCGGGCCGC CTGCCTGGCC
GCCGGCATGA ACGACCACAT CGCCAAGCCG GTCGATCCCG CGCACCTCTA CGCGGTGCTG
CTGCGCTGGC TGTCCGGCGC GGCGGGCGGC CCGCCACAGG CTGTCGCACC AGGCGTCGCA
GCCGCTGCTG CACCTGCTGT TGCACCGACC GCGACGCAGC CCGCCGCGGT CGAGCCGCCG
CGCCACGCCG CCGTCGATGT CGACGATCTC GACGATCTCG ACGGCCTGCC TCGCATCCCC
GGCCTCGATG CACGGCAGGC GATGAACTAC GTGCAGGGCC GCGTCGAGGT CTACCGGCGC
GTGCTGCGGC AGTTCGCCTA CCACTACGGC GACGACTGGA CCGAGCTGGC GCAGCAGCTG
GTGCACGGCG ACTTCAAGGC GCTCGGCCGC ACCGCCCACG CGCTCAAGAG CGCGGCCGAG
TCGATCGGGG CCGGCCGTCT GGCGCAGCTG GCCGAGGCGC TCGAAGCCGC GGTGGCGTCG
AACGCGTCCG CCGATGCCCT GGCCGTCGCC GCCGAGGCGA TGCACGAGGA GCTGGCCTTC
CTGGTGGCCG GCATCCGCAC CAGCACGCTG GGCGACGAGA CGCTGCCCGC GCCGCTGGCC
GGCACGGCGA TGTCGAGCCG CGATCTCGAC CGCCTCGAAG CCCTGCTCGC CGCCGGCGAC
TACGAGGCGG TGGCGCTGTT CCGCGAGCTG CGCCTGCCGA TGCGCCAGCA GTTCAGCACC
CCGCTGGGCG ACGTCGAATC GAGCCTGCGC ATCTTCGACT TCGACGCCGC GCTGGCGGCG
CTGCGGGCAG TGCGCGCGGC CGGCCGGATC TGA
|
|---|
| Protein sequence | MSLHTWVTRL IWLCMAPLLL LAAYLAIDRV RGVQAERDLV AENLSQELAA SIDQGLQARI
GALQMLAQSP LADDPSRWRE LYQEAQGFRQ SFGSHVVLAD RSLRMRFTTR SPFGAELPML
PRPKGQAAAP KALETGLPAV GDTFIGPIAK APLVAIAVPA LRGGQVTALL LTTFEASQYQ
AQLDQVRLPA HWSLSLLDGK GDVIARRAPA EPPAQRVVDA EGRFAVRSAV APWSVVLEIP
RDVYRAPLQA AALTLAIAIL GASLAGVLGG MLASRRLGRA VDSLAQPPQP GTPPSSIREI
AAARQLIDET ARRSQAAQDS LRDSERRFRR LFQEAPLPLA LVSRDARVTD INRRFVQLFG
YTLAEIPTLA HWWQLAYPDA TYRAAVIARW NAARVAVAQT RGDIAPQEYH VTCRDGSVRT
LLIAGIDQDD GFMATFFDIT EIRRAEQHVR ALNADLERRV ADRTGELLQA REAAEAANRA
KSAFLANMSH EIRTPMNAIV GLAHLLRRDA HEPVAAQRLG QMIDAAGHLL QVINDILDLS
KIEAGKLQLE QLPFSLQALL ARNCALVADR ARAKGLAVAI EVDGVPDALS GDPTRLSQAL
LNLLGNAVKF TEQGSIVLRA ECVARGTDDH LTVRFRVRDT GIGIAPDKLD QLFAPFMQAD
ASTTRRFGGT GLGLAITQRL AATMGGEVGV RSEPGRGSEF WFTAQLREGA AARPAGAAVE
ALTHPFGDSF ADPREALERL RSCCAGARLL LVEDNPVNQD VALELLRAAG FAVDVASNGV
EALAQVHGRS HDLILMDMQM PEMDGLEATR LIRALPGCAT VPILAMTANA FGDDRAACLA
AGMNDHIAKP VDPAHLYAVL LRWLSGAAGG PPQAVAPGVA AAAAPAVAPT ATQPAAVEPP
RHAAVDVDDL DDLDGLPRIP GLDARQAMNY VQGRVEVYRR VLRQFAYHYG DDWTELAQQL
VHGDFKALGR TAHALKSAAE SIGAGRLAQL AEALEAAVAS NASADALAVA AEAMHEELAF
LVAGIRTSTL GDETLPAPLA GTAMSSRDLD RLEALLAAGD YEAVALFREL RLPMRQQFST
PLGDVESSLR IFDFDAALAA LRAVRAAGRI
|
|---|
| |