| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4169 |
|---|
| Symbol | |
|---|
| ID | 6162397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4672970 |
|---|
| End bp | 4674631 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641666946 |
|---|
| Product | DNA methylase N-4/N-6 domain-containing protein |
|---|
| Protein accession | YP_001793185 |
|---|
| Protein GI | 171060836 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2189] Adenine specific DNA methylase Mod |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAC AAAAACTAGA ACTCACCTGG ATCGGCAAAG ACCAGCGCCC GCGCCTCGAA
CCCCGCATCC TGCTGGAAGA CCCGGCGCGC AGTTACCACG CCCGGCAGCG GGTGACGGAC
AAGGACCTGT TCGACAACCG GCTCATCAAG GGCGACAACC TGCTGGCACT CAAGGCGCTG
GAGGCGGAGT TTGCGGGCAG GGTGAAATGT GTCTTCATCG ACCCACCGTA CAACACCGGC
AGCGCGTTCA CGCATTACGA CGACGGGCTG GAACATTCGA TCTGGCTGGG GCTGATGCGC
GACCGGCTGG AGATCATCCG GCGCTTGCTG TCAGACGATG GGTCGCTGTG GATCACGATT
GATGACAACG AGGCGCACTA CCTCAAGGTG TTGTGTGATG AGGTATTTGG GCGTCGGAAT
TATTTGACCA GCGTTGTTTG GGAAAAAGAT AAGGGAAGGC GCAGTGATAC AACATTCTCC
GCATCCCATG ACTATGTTCT GATCTATGCG CGTAATCCAG ATCTGTTTGG AAAGACGCGG
AATTTGCTAG AAAGAACGGA AGACCAAGAA AGTCGGTATC GAAATCCAGA TAACGATCCG
CGTGGGCCAT GGCTTCAAGG CGACAACGGC ACTGCGAAGA GTTCGAGCGA GGGGTCACGC
TTTCCTGTTG TCCTGCCGTC TGGTCGATCA GTGGTGCCCC CACCGAGTCG CGGTTGGAGC
TTTTCTAGAG AGACTTTGGA AACCGCACGG GCAGAGGGCC GTGTCTACTT CGGAGCCAAG
GGCGACGGTA TGCCGATCAT CAAGCGGTAC CTGTCTGCTG TTCAAGCTGG TGTTGTCCCT
CGCACATGGT GGCCTGCGGA TGAAGCCGGA CACAACCAAG AGGCAAAACG AGATCATTTA
AACAAGCTCC TGCGTGATGT GGAGCCCTTT CCGACGCCGA AGCCTGAGCG ATTGCTTCAT
CGCATTTTTT CAATTGCCAC CAACCCCGGC GACCTCGTCC TCGATTCCTT CGCCGGCTCC
GGCACCACCG GCGCCGTCGC CCACAAGATG GGCCGGCGCT GGATCATGGT GGAGCTGGGC
GAGCACTGCC ACACGCACAT CGTGCCGCGC CTGCAGAAAG TCATCGATGG CCAGGACCCC
GGCGGCGTGA CGCAGGCCAC CGGCTGGCAA GGCGGCGGTG GTTTCCGCTA CTACGAGCTG
GCGCCCACGC TGCTGGCCAC CGACCGCTGG GGCAACCTGG TGATCAACCC CGAATACGAC
GCCGCCATGC TGTCGGCGGC GATGTGCAAG CTGGAGGGCT TCAGCTACGC GCCGTCCGAG
GTGCTGTGGT GGCAGCACGG CCGCAGCAGC GAGCGTGATT TCATCTACGT GACCACCCAG
ACGCTGAGTG CCGAGCAGCT CGACGCGTTG AGCAGCGAGG TGGGCACCGA GCGCTCGCTG
CTGGTGTGCT GCGCCGCCTA TCGGGGCGTG AGCGCCGCCC AGGCCGCCGA GCGCTGGCCC
CAGCTCACCA TCAAGAAGAT CCCCAAGATG GTGAAAGACC GCTGCGAGTG GGGCCACGAC
GACTACAGCC TGAACGTGGC CAATCTGCCG ATGGCGCAGA AGAAGGCCGC GGCGCCAACG
CAGGATGACT TGTTTGGAGC GGCAGCCGGA GACTCGGCAT GA
|
|---|
| Protein sequence | MTQQKLELTW IGKDQRPRLE PRILLEDPAR SYHARQRVTD KDLFDNRLIK GDNLLALKAL
EAEFAGRVKC VFIDPPYNTG SAFTHYDDGL EHSIWLGLMR DRLEIIRRLL SDDGSLWITI
DDNEAHYLKV LCDEVFGRRN YLTSVVWEKD KGRRSDTTFS ASHDYVLIYA RNPDLFGKTR
NLLERTEDQE SRYRNPDNDP RGPWLQGDNG TAKSSSEGSR FPVVLPSGRS VVPPPSRGWS
FSRETLETAR AEGRVYFGAK GDGMPIIKRY LSAVQAGVVP RTWWPADEAG HNQEAKRDHL
NKLLRDVEPF PTPKPERLLH RIFSIATNPG DLVLDSFAGS GTTGAVAHKM GRRWIMVELG
EHCHTHIVPR LQKVIDGQDP GGVTQATGWQ GGGGFRYYEL APTLLATDRW GNLVINPEYD
AAMLSAAMCK LEGFSYAPSE VLWWQHGRSS ERDFIYVTTQ TLSAEQLDAL SSEVGTERSL
LVCCAAYRGV SAAQAAERWP QLTIKKIPKM VKDRCEWGHD DYSLNVANLP MAQKKAAAPT
QDDLFGAAAG DSA
|
|---|
| |