| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4100 |
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| Symbol | |
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| ID | 6160058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4599893 |
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| End bp | 4604026 |
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| Gene Length | 4134 bp |
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| Protein Length | 1377 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 641666878 |
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| Product | tetratricopeptide TPR_4 |
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| Protein accession | YP_001793117 |
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| Protein GI | 171060768 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3899] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000000225277 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAACAAG CCTGGGGCAA ACCACCCGCA CCGGTCATCC TGATGATCGT GCGCGAGGCG
GCATGGCTGT CGTGCGCCCT GTCCGACGGG CACGGCGTGG GCATCCACGC GCAGATCCGC
ATCGCCGATC CGGCGGCGCT GCAGGCCGGG CTGGCCGAGC GCGACGCCGC CCCCGCCGAC
ACGGCGGCGC GCCAGGCGCT CGGCGGCCGG GTCTGGCTGG AGCTGCTGCC GGCGCCGATC
CGGCGCTTCC TGCACGCCAG CCCGGCGCGT GTGCTGACGC TGCAGCTCGG CGCCGACCTG
GCCGGCCTGC CGTGGGAACT GGCCTTCGAC GGCACACGGC ACCTCGATGA GAAGTTCGCG
CTGGCGCGCC AGATCCTGCG CGACGAAGAC GCGCCGACCC CGCCGGTGCG CGCCGCCGCG
CCCGAGCAGC TGCGCGTGCT GGTGCTGGCC CGGCTCGACC CGGCGCCCGC GGCCGATGCC
GCCGCCCGCG CGCTGATCCA GGGCCTGCGC CGGCTGCCCG GCCTGCACCT GACGGCGCTC
GATGCCCGCG AGCTGGCCGG CCTCGCCCAG CCGGCACTGG CCGCGCTGGG GCTGCACGAC
ATCGTGCACT GCTGCGGCAT CGAGCCGCGC CTGCTGGCCG GGCCGCAGCT GCTGGTCTGG
GAGCCGCCAC CGGCCCGGCC GGCTGCCGAC GCCCGCGCCG GCCCGGCCGG CGTCGATCCC
TGCGCCACGC GCCTGACGAT GGCCACGCTG GCCTGGGCGC AGGCGCAGGG CACGCAGCTG
CTGGTGCACC CGATCGCGCC GGCCGGCTTC ATGCCGGTCT TCTACGGCCA GCTGGCGAGC
GGCCAGCCGC TCGGCGAGGC CGCCCGCCGG GCCCGCATCG CCGCCCGCGA ACAGGGCGAC
GCCTGCTGGC TGGCCCATCT GCAGGGCGAT GCCCAGCTGA CCCTGCTGCG CAGCGCCGGC
CGCGCGCCGC AGCCCGACCA CCTGCGCCAG GTCACGATGC TGTCGTGCGA CATGGTCGAC
TCGACCCGGC TGATGCGCCA CCTCGGCAGC GAGGCCTACA GCGAGATCCT GCTGCGCTAC
CACGGCGCCT GCGCGGCGGT GGTCGGCCAG CACGGCGGCG TGGCCGACGA CCCGCAGGGC
GACGACGGCG TGATGTGCTA CTTCGGCTTC CCGCAGGCGG CCGAAAACGC CGCCGTGCTG
GCGCTGCGCG CCGGCCTCGA ACTGCTGCGC TGCATGGCCG ACGCCGGCAT CGCCGTGCGG
CTGGGCGTGG CGACCGGCCA GATCGTCGTG CGGGCCGGCC AGCCGGTCGG CGCGGCGGTG
CACTACGCCG CCCGCCTGCA GGCCATCGCC GCGCCCGCCA CGCTGCTGGC GAGCGAGGAG
ACCCGCCGCG TCGCCGGTGA GCGCTTCGAG TTCAGGCGCC TCGAGCAGGT GCCCGACATG
AAGGGCTTCG ACCGGCCCGA GCCGGTCTAC CGCGTGCTGG GCGAATCGGC GCTGCACGGC
ACCGAACGCT TCGACGCCCG CTCGCGGCTG TCGCCCTTCG TCGGCCGCGA CAAGGAGCTG
GCGCGGCTGC GCGCGCACTG GCGCCACGCC AGCGCCGGCC AGTGCCTGGC GATCTACGTC
TCGGGCGACG CCGGCATCGG CAAGTCGCGG CTGGTGCGCG AGTTCCGCCG CGCCGAGACC
GGCCGCGGCC AGCTGACGAT CGAATGGCGC TGCGCCCGCG AGCAGAGCAG CAGCGCGCTC
TACCCGGTGA CCGACTTCCT GCGCCGCCAC CTGCGCCTGC AGGCGGGCGA CGCCGCGCCG
GTGCAGCTCG CCCGGTTGGC CGCCAGCAGC CTGACCGATC TGGCGATCGA GCCGGCCACG
GCGCTGGCCC TGGCCGCCAA CCTGCTGTCG ATCGAGACCG GCGAACGCCA CGCCGTGCTC
GACGGCGCGC CCGAGCGGCT GCGCCAGCAG ACCCTGGAGC TGCTGCAGAA GTGGCTCTGG
CGCATCGCCG ACAGCGCGCC GCTGTGCCTG ATCATCGAGG ACGTGCACTG GATCGACCCG
ACCACCAGCG AGCTGCTCGG CCGGGTCACC GCCGAGCGCC AGGACGGCGG CCTGATGCTG
CTGATGACCG GTCGCCCCGA GCCCGAGCAC CAGTGGGCCG CCGCGCTGGC CGCCGAGGAG
ATCGCGCTGG CCGGCCTGAG CGACGAGATG TCGCGCGCGA TGGTGGCGGC GGTCTGCGAG
GGCAGCCGGG TCGACGCCGC CTTCGTGCAG TGGCTGGTCG AACGCGCCGA CGGCGTACCG
CTGTTCATCG AGGAATCGGC CCGCATGGCG CTCGACATCG GCGCCGAGGA AGGCACGCCA
CAGCTGCGCC GCGCCAGCCT GCAGGACGCC GTGCCGACCA CCATCCACGA CCTGCTGATG
GCGCGCCTGG ACCGCATGCC GCTGGCCAAG CACGTGGCGC AGGTGGCCAG CGCGATCGGC
CGCGAGGTCG CGCGCCACCT GATCGAGGCG GTCTGCGCGC ACGAGCGCTG CCCGATCGCG
GTGGCCGACC TCGACGAGGG GCTGGCGCTG CTGGTGCGCG CCGGCCTGCT GATCCCCAAG
GGCAGCGGGC CGGGCAGCAG CTTCCTGTTC AAGCACGCGC TGGTGCGCGA CGCCGCCTAC
GGCTCGATGT GGGGGCGCGA CCGCAAGCGC CTGCACGCGG CGATCGCCCA CGTCATCCAG
GACACCCTGC CGCAGCTCGC CGAGCTGCAG CCCGAGCTGC TGGCGCGCCA CTGTGCCGAG
GCCGGCATGG CCGCCGAGGC GCTGGTGCAG TGGGAACGCG CGGCGCGCCG CTCGGCCGCC
CGCTCGGCGC AGCGCGAGGC GATCACCCAC CTCGGCCACG CGCTGGCCGC GCTCGAGGCG
CTGCCCGCCG GCCTCGAGCG CGACCGCATC GAGCTGCGCC TGCAGCTGAT GCGCGCCGGC
CGCCTGATCG CCACCGAAGG CTACGGCGCC GACCAGGTCG AGGCGGTCTA CGGCCGCGCG
CTCGCGCTGT GCCGCCAGCT CGACGACCCG GTGGCGATGG CCAAGGCGCT GTTCGGCCTG
GAGGGCTACC ACTTCATGCG CGCCGACTTC GGCCGCGCCC GCGCCATCAG CGAGCAGGCC
GCCGAACTGG CGCGGCACTC GTCCGACCCG ATGGCGGCGC TGCAGTCGCA GTGGGTCGCC
GCCAACCTGC TGTTTCATCA AGGTGAACTA CGCCCGGCGG TCGAGCGCAT GGACAGCTGC
CTGGCGGCGT ACCAGACTCT CGAACACCGC CCGAACGCGG TACAGGATCC GGGCGTGATG
TGCCTGTGCT ACTCGTCGTG GGCACTCTGG CAGCTCGGCC AGCCCGATCA GGCGCTGCAG
CGCGCCACCC GGGTGGTCGA GCTGGCGCGC CGTCTCAACC ACCCCTTCAG CATGGCCGAA
GCATTCGGAT TCATCACCGT GGTGCAGCAC TTCCGCGGCG ACCACGAGGC CGCGCTGCAC
AGCGTCGAGC AGGCCCTGCG GATCAGCGAG GACGGCGGCT TTTCGGTCTG GCTGGCGCAT
GCCCAGGTGA TGCACGGCCG GCTGCTGGCG CAGGGCGGCG AGCACGAGCG CGGTGTCGCG
CTGATGCGCA GCGGCTACGA GCGCTGGTCG GCCAGCGGCG CGGTCGTGAC GCGGCCGTTC
TACCTGGCGA TGCAGGCCGA AGGGCTGGCG CTGGCGGGCC GTCCGGACGA AGGCCTGGGC
CTGCTCGACA GCGCACGCGC GCTGATCGAG CAGCACCACG AGCGCTACTT CGAGCCCGAG
GTGCTGCGCC TGACCGGCGA GCTGACGCGC CAGCTGGCGA GCCGGCACGG CGGGCTGCAG
GACGACGTCG CCGAGGCCTG GTTCGAACGC GCGCTGGCCT CGGCCGACGA GATGCAGCAG
CACGGCCTGG CGCTGCGCTG CGCCTGCAGC CTGGCGGCCT TGTGGCAATC GGCGGACGCG
CACGCCCGCG CCGGCCAGCT GATCGAGCGC CATCTGCGGC TGTGCACCGA AGGCAGCACC
ACCGCCGACC TGCGACGCGC CCGCGCGCTG CTGGCAGCGG CACAGGAACA CACCAGGGGG
ACACCATGGT CATCGACGAC ACGACGCGCT TTCGCGCCGA CGATCACGCA CTGA
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| Protein sequence | MEQAWGKPPA PVILMIVREA AWLSCALSDG HGVGIHAQIR IADPAALQAG LAERDAAPAD
TAARQALGGR VWLELLPAPI RRFLHASPAR VLTLQLGADL AGLPWELAFD GTRHLDEKFA
LARQILRDED APTPPVRAAA PEQLRVLVLA RLDPAPAADA AARALIQGLR RLPGLHLTAL
DARELAGLAQ PALAALGLHD IVHCCGIEPR LLAGPQLLVW EPPPARPAAD ARAGPAGVDP
CATRLTMATL AWAQAQGTQL LVHPIAPAGF MPVFYGQLAS GQPLGEAARR ARIAAREQGD
ACWLAHLQGD AQLTLLRSAG RAPQPDHLRQ VTMLSCDMVD STRLMRHLGS EAYSEILLRY
HGACAAVVGQ HGGVADDPQG DDGVMCYFGF PQAAENAAVL ALRAGLELLR CMADAGIAVR
LGVATGQIVV RAGQPVGAAV HYAARLQAIA APATLLASEE TRRVAGERFE FRRLEQVPDM
KGFDRPEPVY RVLGESALHG TERFDARSRL SPFVGRDKEL ARLRAHWRHA SAGQCLAIYV
SGDAGIGKSR LVREFRRAET GRGQLTIEWR CAREQSSSAL YPVTDFLRRH LRLQAGDAAP
VQLARLAASS LTDLAIEPAT ALALAANLLS IETGERHAVL DGAPERLRQQ TLELLQKWLW
RIADSAPLCL IIEDVHWIDP TTSELLGRVT AERQDGGLML LMTGRPEPEH QWAAALAAEE
IALAGLSDEM SRAMVAAVCE GSRVDAAFVQ WLVERADGVP LFIEESARMA LDIGAEEGTP
QLRRASLQDA VPTTIHDLLM ARLDRMPLAK HVAQVASAIG REVARHLIEA VCAHERCPIA
VADLDEGLAL LVRAGLLIPK GSGPGSSFLF KHALVRDAAY GSMWGRDRKR LHAAIAHVIQ
DTLPQLAELQ PELLARHCAE AGMAAEALVQ WERAARRSAA RSAQREAITH LGHALAALEA
LPAGLERDRI ELRLQLMRAG RLIATEGYGA DQVEAVYGRA LALCRQLDDP VAMAKALFGL
EGYHFMRADF GRARAISEQA AELARHSSDP MAALQSQWVA ANLLFHQGEL RPAVERMDSC
LAAYQTLEHR PNAVQDPGVM CLCYSSWALW QLGQPDQALQ RATRVVELAR RLNHPFSMAE
AFGFITVVQH FRGDHEAALH SVEQALRISE DGGFSVWLAH AQVMHGRLLA QGGEHERGVA
LMRSGYERWS ASGAVVTRPF YLAMQAEGLA LAGRPDEGLG LLDSARALIE QHHERYFEPE
VLRLTGELTR QLASRHGGLQ DDVAEAWFER ALASADEMQQ HGLALRCACS LAALWQSADA
HARAGQLIER HLRLCTEGST TADLRRARAL LAAAQEHTRG TPWSSTTRRA FAPTITH
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