| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4090 |
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| Symbol | |
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| ID | 6160212 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4585545 |
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| End bp | 4587041 |
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| Gene Length | 1497 bp |
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| Protein Length | 498 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641666868 |
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| Product | EvpB family type VI secretion protein |
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| Protein accession | YP_001793107 |
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| Protein GI | 171060758 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00000002005 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCACTG AAACCTCCCC CGGCGGTGCC GCGCTGCAAG GTGTCGCCTT CGAAGGCGGC
GACTTCGCCG CGCTGCTCGA CCGCGAATTC AAGCCCAAGA CCGACGAGGC CAAGAGCGCC
GTCGAACAGG CGGTGATGAC GCTGGCGCAG CAGGCGCTGG CGCAGACCAC GCTGATCGGC
AGCGACGTGA TCGGCTCGAT CGAGGCGCTG ATCGCCGCAC TCGACGCCAA GCTCAGCGCG
CAGGTCAACG CGATCCTGCA CCACGACGAC TTCCAGAAGC TCGAGAGCGC CTGGCGCGGC
CTGCACCACC TCGTCAACAA CACCGAGACC GACGAGATGC TGATGATCCG GGTGATGAAC
ATCTCGAAGA ACGAGCTGGG CAAGACCCTC AAGCGCTACA AGGGCACGGC CTGGGACCAG
AGCCCCATCT TCAAGAAGAT CTACGAAGAG GAATACGGCC AGTTCGGCGG CGCGCCGTAT
GGCTGCCTGG TGGGCGACTA CTACTTCGAC CAGAGCGCGC CCGATGTCGA GCTGCTGGGC
GAGATCAGCA AGATCTCGGC CTCGGCCCAC GCCCCGTTCA TCGCCGCCGC CAACCCCGCG
CTGATGCAGA TGGGCTCGTG GCAGGAACTG GCCAATCCGC GCGACCTGAC CAAGATCTTC
ACCACACCCG AATACGCCGC CTGGCGCTCG TTGCGCGAGT CCGACGACGC ACGCTACATC
GGCCTGGCGA TGCCGCGTTT CCTGGCCCGC GCGCCGTATG GCGCCAAGAC CAATCCGGTC
GAGGAGTTCG ACTTCGAGGA AGACACCGCC AACGCCGACC ACAGCAAGTA CACCTGGGCC
AATTCGGCCT ACGCGATGGC GGTCAACATC AACCGCGCGT TCAAGGAATA CGGCTGGTGC
TCGCGCATCC GCGGCATCGA GTCGGGTGGC GCGGTCGAGG GCCTGCCCAC GCACACCTTC
CCGACCGACG ACGGCGGCGT CGACATGAAG TGCCCGACCG AGATCGCCAT CAGCGACCGC
CGCGAGGCCG AGCTGGCCAA GAACGGCTTC ATGCCGCTGG TGCACAAGAA GAACTCGGAC
CTGGCCGCCT TCATCGGCGC GCAGTCGCTG CAGAAGCCGG CCGAATACGA CGACCCCGAC
GCCACCGCCA ATGCCAACCT GGCCGCGCGC CTGCCGTATC TGTTTGCCTG CAGCCGCTTT
GCGCACTACC TGAAATGCAT CGTGCGCGAC AAGATCGGCT CGTTCAAGGA ACGCGACGAG
ATCCAGCGCT GGCTGCAGGA CTGGATCATG AACTACGTCG ACGGCGACCC GGCCCATTCG
TCCGAAGAGA CCAAGTCGCG CCGCCCGTTG GCGGCCGCCG AGGTGGTGGT GGCCGAGGAC
GAGAGCAACC CCGGCTACTA CACCTCGAAG ATCTTCCTGC GCCCGCACTA CCAGCTCGAA
GGGCTGACGG TGTCGCTGCG GCTGGTGTCC AAGCTGCCGT CGCAGAAATC GGCCTGA
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| Protein sequence | MATETSPGGA ALQGVAFEGG DFAALLDREF KPKTDEAKSA VEQAVMTLAQ QALAQTTLIG
SDVIGSIEAL IAALDAKLSA QVNAILHHDD FQKLESAWRG LHHLVNNTET DEMLMIRVMN
ISKNELGKTL KRYKGTAWDQ SPIFKKIYEE EYGQFGGAPY GCLVGDYYFD QSAPDVELLG
EISKISASAH APFIAAANPA LMQMGSWQEL ANPRDLTKIF TTPEYAAWRS LRESDDARYI
GLAMPRFLAR APYGAKTNPV EEFDFEEDTA NADHSKYTWA NSAYAMAVNI NRAFKEYGWC
SRIRGIESGG AVEGLPTHTF PTDDGGVDMK CPTEIAISDR REAELAKNGF MPLVHKKNSD
LAAFIGAQSL QKPAEYDDPD ATANANLAAR LPYLFACSRF AHYLKCIVRD KIGSFKERDE
IQRWLQDWIM NYVDGDPAHS SEETKSRRPL AAAEVVVAED ESNPGYYTSK IFLRPHYQLE
GLTVSLRLVS KLPSQKSA
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