Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4084 |
Symbol | |
ID | 6161755 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4577943 |
End bp | 4580693 |
Gene Length | 2751 bp |
Protein Length | 916 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641666862 |
Product | type VI secretion ATPase |
Protein accession | YP_001793101 |
Protein GI | 171060752 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00000000202411 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACCGAGA TCTCCCGCAC GGCCCTGTTC GGCAAGCTCG ACCCGCTGGC CTACAAGGCG ATCGAAGGCG CCACGGTGTT CTGCAAGATG CGCGGCAATC CCTACGTCGA GCTGCAGCAC TGGCTGGCGC AGATCCTCAA CACGCCCGAT TCCGACCTGC ACCGCATCAT TCGCCACTAC GAGCTCGACA GCGCCGCGCT CGCCGCCGAC CTGACGCGCT CGCTCGACCG CCTGCCGCGC GGCGCCTCGT CGATCTCGGA CTTCTCGACC TTCGTGCTCG ATGCGGTCGA GCGGGCCTGG ATCTACGGCT CGCTGATGTT CGGCGAACGC CAGATCCGCA CCGGCCACCT GCTGATCGGG CTGCTCAAGA CGCCGTCGCT GCGCAACGTG CTGCTGTCGA TCTCGAAGCA GTTCGAGCGC GTCAAGCTCG ATGACCTGGC CGACCGATTC GCCAGCCTGC TGGCGGCGTC GCCCGAGCAG TCGCAAGGCG CCAGCGACAG CGGTGCCGCA CCCGGCGAGG CCAGCGACGC GATCCCGCCC GCGGCGATGG GCAAGCAGGA GGCGCTCAAG CGCTTCACCA CCGACCTCAC CGAGCAGGCG CGCGCCGGCA AGATGGACCC GATCGTCGGC CGCGACGACG AGATCCGCCA GGTGGTCGAC ATCCTGATGC GCAGGCGCCA GAACAACCCG ATCCTGGTCG GCGAGGCCGG TGTCGGCAAG ACCGCGGTGG TGGAAGGTTT CGCCCAGCGC ATCGCCCGCG GCGACGTGCC GCCGGCGCTG AAGGAGGTGC AGCTGCTCGC GCTCGACGTC GGCCTGCTGC AGGCGGGGGC GAGCATGAAG GGCGAGTTCG AGCAGCGCCT GCGTTCGGTG ATCGAGGAGG TGCAGGCGAG CCCGAAGCCG ATCATCCTGT TCGTCGACGA GACCCACACG CTGGTCGGCG CCGGTGGCGC GGCCGGCACG GGGGACGCGG CCAACCTGCT CAAGCCCGCG CTGGCCCGCG GCACGCTGCG CACGGTGGGC GCCACCACCT TTGCCGAGTA CAAGAAATAC ATCGAGAAGG ACCCGGCGCT GACGCGGCGT TTCCAGAGCG TGCAGGTCGA CGAGCCGGAT GAAAAACGCG CCATCCTGAT GATGCGCGGC GTCGCCAGCA CGATGGAAAA GCACCACCAG GTGCAGATCC TCGACGAGGC GCTGGAGGCC GCCGTCAAGT TGAGCCACCG CTACATCCCG GCGCGCCAGC TGCCCGACAA GAGCGTCAGC CTGCTCGACA CCGCCTGCGC CCGCGTGGCG GTGAGCCTGC ACGCGACGCC GGCCGAGGTC GACGACACGC GCAAGCGCAT CGAGGCGCTC GAGACCGAGC TCGGCATCAT CGGCCGCGAG CGCGCCATCG GCATCGACGT GCTGGAACGC GAGGCCGATG CATCGCGCCT GCTGGCCGAT GAACGCGAGC GCCTGGCCCT GCTCGACCAG CGCTGGGCCG AAGAGAAGAC GCTGGTCGAC GAGCTGCTCG CCCTGCGCGC GAAGCTGCGT GGCGGCGTGC GGCCGGTCGA AGGCACCGGC AGCGAACTCG AAGCGGCGGT GGCGCCGGTG GCCGAGGGGG TCGCCGAGCC GGGTCTGAGC GAGGGCGAGC GCGCCGACGC GCTGGCCCGC CTGCGCGAGG TGCAGGCGCA GCTCGCCACG CTGCAAGGCG AGAGCCCGCT GATCCTGCCC ACGGTCGACT ACCAGGCGGT GGCCAGCGTG GTCGGCGACT GGACCGGCAT CCCGGTCGGC CGCATGGCGC GCAACGAGAT CGACACCGTG CTCAAGCTGC CCACGCTGCT GGCCCAGCGC GTGATCGGCC AGGACCACGC GATGGAGATG ATCGCCAAGC GCATCCAGAC CTCGCGCGCC GGCCTCGACA ACCCGGGCAA GCCGATCGGC GTCTTCATGC TCGCCGGCAC TTCGGGCGTC GGCAAGACCG AAACCGCGCT GGCGCTGGCC GAGGCGCTCT ACGGCGGCGA GCAGAACCTC ATCGTCATCA ACATGAGCGA GTACCAGGAG GCTCACACCG TGAGCTCGCT CAAAGGCGCG CCACCCGGCT ACGTCGGCTA TGGCGAAGGG GGCGTGCTGA CCGAGGCGGT GCGCCGCAAG CCCTACAGCG TGGTGCTGCT CGACGAGGTC GAGAAGGCCC ACCCGGATGT GCACGAGCTG TTCTTCCAGG TCTTCGACAA GGGCTTCATG GAAGACGGCG AAGGCCGCGT GATCGACTTC AAGAACACCC TGATCCTGCT GACCACCAAC GCCGGCACCG AGCTGATCTC GGCGCTGTGC CGCGACCCCG CGCGCATGCC CGACCCGGAG GGCATGGCGA AGGCGCTGCG CCAGCCGCTG CTGGAGATCT TTCCGCCCGC GCTGCTCGGC CGGCTGGTGG CGATCCCGTA TTACCCGCTC AGCGACGAGA TGCTCGGGCG CATCGTCAAG CTGCAGCTGG AGCGCATCCG CAAGCGGGTG GAGACGCGCT ACAAGATCCC GTTCGAGTAT GGCGACGACG TGGTCGAGCT GGTGGTCAGC CGCTGCACCG AGAGCGAGTC GGGCGGGCGG ATGATCGACG CGATCCTGAC CAACACGATG CTGCCGGACA TCAGCCGCGA GTTCCTGAAT CGCATGCTCG ATGGCACGCC GATCGAGCGG GTGGAGGTGC AGGTCAGCGA AGGCAATTTC GCCTACGGCT TCGGGCCCGA CACGGCCGCG CCCGCACGCG ATGAACCCTG A
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Protein sequence | MTEISRTALF GKLDPLAYKA IEGATVFCKM RGNPYVELQH WLAQILNTPD SDLHRIIRHY ELDSAALAAD LTRSLDRLPR GASSISDFST FVLDAVERAW IYGSLMFGER QIRTGHLLIG LLKTPSLRNV LLSISKQFER VKLDDLADRF ASLLAASPEQ SQGASDSGAA PGEASDAIPP AAMGKQEALK RFTTDLTEQA RAGKMDPIVG RDDEIRQVVD ILMRRRQNNP ILVGEAGVGK TAVVEGFAQR IARGDVPPAL KEVQLLALDV GLLQAGASMK GEFEQRLRSV IEEVQASPKP IILFVDETHT LVGAGGAAGT GDAANLLKPA LARGTLRTVG ATTFAEYKKY IEKDPALTRR FQSVQVDEPD EKRAILMMRG VASTMEKHHQ VQILDEALEA AVKLSHRYIP ARQLPDKSVS LLDTACARVA VSLHATPAEV DDTRKRIEAL ETELGIIGRE RAIGIDVLER EADASRLLAD ERERLALLDQ RWAEEKTLVD ELLALRAKLR GGVRPVEGTG SELEAAVAPV AEGVAEPGLS EGERADALAR LREVQAQLAT LQGESPLILP TVDYQAVASV VGDWTGIPVG RMARNEIDTV LKLPTLLAQR VIGQDHAMEM IAKRIQTSRA GLDNPGKPIG VFMLAGTSGV GKTETALALA EALYGGEQNL IVINMSEYQE AHTVSSLKGA PPGYVGYGEG GVLTEAVRRK PYSVVLLDEV EKAHPDVHEL FFQVFDKGFM EDGEGRVIDF KNTLILLTTN AGTELISALC RDPARMPDPE GMAKALRQPL LEIFPPALLG RLVAIPYYPL SDEMLGRIVK LQLERIRKRV ETRYKIPFEY GDDVVELVVS RCTESESGGR MIDAILTNTM LPDISREFLN RMLDGTPIER VEVQVSEGNF AYGFGPDTAA PARDEP
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