Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4047 |
Symbol | |
ID | 6163234 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4533768 |
End bp | 4535240 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641666825 |
Product | glutamyl-tRNA(Gln) amidotransferase, B subunit |
Protein accession | YP_001793064 |
Protein GI | 171060715 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0000000627474 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGCAT CCCTCCTCGT GCGTGGTTAT GAAGTCGTGA TCGGCTTCGA GACCCACGCC CAGCTTTCCA CCCAGTCGAA GATCTTCTCG GGGGCATCGA CCGCCTTCGG CGCCGAGCCC AACACGCAGG CCTGCGCGGT CGATCTGGCG CTGCCGGGCA GCCTGCCGGT GATGAACCGC GGCGCGGTCG AGCGCGCCAT CCGCTTCGGC CTGGCGGTGG GCGCGACGAT CGCGCCGATG TCGATCTTCG CGCGCAAGAA CTACTTCTAC CCGGACCTGC CCAAGGGCTA CCAGATCAGC CAGTACGAGA CGCCGGTGGT GCAGGGCGGC GCGGTCGGCT TCTTCGTCGA CGGCGAGCCG ATGAAGGTCA ACCTGACGCG CGCCCACCTC GAGGAGGACG CCGGCAAGTC GATCCACGAG GGCCTGGGCT CGAACGACCG GCTCGGCCAC GCCGTCAGCG GCATCGACCT CAACCGCGCC GGCACGCCGC TGCTGGAGAT CGTCACCGAG CCCGACCTGC GCTCCAGCCG GCAGGCGGTC GAATACGCCC GTGCGCTGCA CACGCTGGTG GTCTGGCTGG GCATCTGCGA CGGCAACATG CAGGAAGGCA GCTTCCGCTG CGACGCCAAC GTGTCGGTGC GCCGCCCCGG CCAGCCCTAC GGCACGCGGC GCGAGATCAA GAACCTCAAC AGCTTTCGCC ACCTGACGCA GGCGATCGAC TACGAGGTGC AGTGGCAGAT CGAGCAGATC GAGGACGGCC ACGAGATCCG CCAGGCCACC GTGCTGTTCG ACCCCGACAG CGGCGAGACC CGCATGATGC GCACCAAGGA AGACGCGCAC GACTACCGCT ACTTCCCCGA CCCGGACCTG CCGCCGCTGC TGATCGGGCC CGAGTGGATC GAGCGCGTCA AGGCCGACAT GCCCGAGCTG CCCGGCGCGC TGGCGGCGCG TTTCCAGAGC GAGCACGGCC TGCCCGCCTA CGACGCGGCC ATGATGACGA CCAGCCGCGC CATCGCCGCG TTCTACCAGG CGGCGGTCGA GGCCTGCGGC CAGCCCAAGC TGGTGGCCAA CTGGCTGATG GGCGAGCTGT CGCGTCGCCT CAACGCCGAA GACCGCGGCA TCGAGACCAG CCCGGTCAGC CCGACCCAGC TGGCCGCGCT GATCGGCCGC ATCGTCGACG GCACGATCTC CAACAACGCC GCGCGGCAGG TCTTCGAGGT GCTCTGGAGC GGCGCGGCGC AGGAGGTCGA CGCCGTCATC GAGGCGCAGG GCCTCAAGCA GATGAACGAC ACCGGCGCGC TCGACGCGAT CATCGACACG GTGCTGGCGG CCAACCAGAA ATCGGTCGAC GAGTTCCGCG CCGGCAAGGA GAAGGCCTTC AACGCGCTGG TCGGCCAGGT CATGAAGGCG AGCAAGGGCA AGGCCAATCC GGCCCAGGTC AACGACCGGC TCAAGAGCCG GCTGGGCGGC TGA
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Protein sequence | MTASLLVRGY EVVIGFETHA QLSTQSKIFS GASTAFGAEP NTQACAVDLA LPGSLPVMNR GAVERAIRFG LAVGATIAPM SIFARKNYFY PDLPKGYQIS QYETPVVQGG AVGFFVDGEP MKVNLTRAHL EEDAGKSIHE GLGSNDRLGH AVSGIDLNRA GTPLLEIVTE PDLRSSRQAV EYARALHTLV VWLGICDGNM QEGSFRCDAN VSVRRPGQPY GTRREIKNLN SFRHLTQAID YEVQWQIEQI EDGHEIRQAT VLFDPDSGET RMMRTKEDAH DYRYFPDPDL PPLLIGPEWI ERVKADMPEL PGALAARFQS EHGLPAYDAA MMTTSRAIAA FYQAAVEACG QPKLVANWLM GELSRRLNAE DRGIETSPVS PTQLAALIGR IVDGTISNNA ARQVFEVLWS GAAQEVDAVI EAQGLKQMND TGALDAIIDT VLAANQKSVD EFRAGKEKAF NALVGQVMKA SKGKANPAQV NDRLKSRLGG
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