Gene Lcho_4047 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_4047 
Symbol 
ID6163234 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4533768 
End bp4535240 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content69% 
IMG OID641666825 
Productglutamyl-tRNA(Gln) amidotransferase, B subunit 
Protein accessionYP_001793064 
Protein GI171060715 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 
TIGRFAM ID[TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000627474 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGCAT CCCTCCTCGT GCGTGGTTAT GAAGTCGTGA TCGGCTTCGA GACCCACGCC 
CAGCTTTCCA CCCAGTCGAA GATCTTCTCG GGGGCATCGA CCGCCTTCGG CGCCGAGCCC
AACACGCAGG CCTGCGCGGT CGATCTGGCG CTGCCGGGCA GCCTGCCGGT GATGAACCGC
GGCGCGGTCG AGCGCGCCAT CCGCTTCGGC CTGGCGGTGG GCGCGACGAT CGCGCCGATG
TCGATCTTCG CGCGCAAGAA CTACTTCTAC CCGGACCTGC CCAAGGGCTA CCAGATCAGC
CAGTACGAGA CGCCGGTGGT GCAGGGCGGC GCGGTCGGCT TCTTCGTCGA CGGCGAGCCG
ATGAAGGTCA ACCTGACGCG CGCCCACCTC GAGGAGGACG CCGGCAAGTC GATCCACGAG
GGCCTGGGCT CGAACGACCG GCTCGGCCAC GCCGTCAGCG GCATCGACCT CAACCGCGCC
GGCACGCCGC TGCTGGAGAT CGTCACCGAG CCCGACCTGC GCTCCAGCCG GCAGGCGGTC
GAATACGCCC GTGCGCTGCA CACGCTGGTG GTCTGGCTGG GCATCTGCGA CGGCAACATG
CAGGAAGGCA GCTTCCGCTG CGACGCCAAC GTGTCGGTGC GCCGCCCCGG CCAGCCCTAC
GGCACGCGGC GCGAGATCAA GAACCTCAAC AGCTTTCGCC ACCTGACGCA GGCGATCGAC
TACGAGGTGC AGTGGCAGAT CGAGCAGATC GAGGACGGCC ACGAGATCCG CCAGGCCACC
GTGCTGTTCG ACCCCGACAG CGGCGAGACC CGCATGATGC GCACCAAGGA AGACGCGCAC
GACTACCGCT ACTTCCCCGA CCCGGACCTG CCGCCGCTGC TGATCGGGCC CGAGTGGATC
GAGCGCGTCA AGGCCGACAT GCCCGAGCTG CCCGGCGCGC TGGCGGCGCG TTTCCAGAGC
GAGCACGGCC TGCCCGCCTA CGACGCGGCC ATGATGACGA CCAGCCGCGC CATCGCCGCG
TTCTACCAGG CGGCGGTCGA GGCCTGCGGC CAGCCCAAGC TGGTGGCCAA CTGGCTGATG
GGCGAGCTGT CGCGTCGCCT CAACGCCGAA GACCGCGGCA TCGAGACCAG CCCGGTCAGC
CCGACCCAGC TGGCCGCGCT GATCGGCCGC ATCGTCGACG GCACGATCTC CAACAACGCC
GCGCGGCAGG TCTTCGAGGT GCTCTGGAGC GGCGCGGCGC AGGAGGTCGA CGCCGTCATC
GAGGCGCAGG GCCTCAAGCA GATGAACGAC ACCGGCGCGC TCGACGCGAT CATCGACACG
GTGCTGGCGG CCAACCAGAA ATCGGTCGAC GAGTTCCGCG CCGGCAAGGA GAAGGCCTTC
AACGCGCTGG TCGGCCAGGT CATGAAGGCG AGCAAGGGCA AGGCCAATCC GGCCCAGGTC
AACGACCGGC TCAAGAGCCG GCTGGGCGGC TGA
 
Protein sequence
MTASLLVRGY EVVIGFETHA QLSTQSKIFS GASTAFGAEP NTQACAVDLA LPGSLPVMNR 
GAVERAIRFG LAVGATIAPM SIFARKNYFY PDLPKGYQIS QYETPVVQGG AVGFFVDGEP
MKVNLTRAHL EEDAGKSIHE GLGSNDRLGH AVSGIDLNRA GTPLLEIVTE PDLRSSRQAV
EYARALHTLV VWLGICDGNM QEGSFRCDAN VSVRRPGQPY GTRREIKNLN SFRHLTQAID
YEVQWQIEQI EDGHEIRQAT VLFDPDSGET RMMRTKEDAH DYRYFPDPDL PPLLIGPEWI
ERVKADMPEL PGALAARFQS EHGLPAYDAA MMTTSRAIAA FYQAAVEACG QPKLVANWLM
GELSRRLNAE DRGIETSPVS PTQLAALIGR IVDGTISNNA ARQVFEVLWS GAAQEVDAVI
EAQGLKQMND TGALDAIIDT VLAANQKSVD EFRAGKEKAF NALVGQVMKA SKGKANPAQV
NDRLKSRLGG