Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_4039 |
Symbol | |
ID | 6160546 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4523758 |
End bp | 4525941 |
Gene Length | 2184 bp |
Protein Length | 727 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641666819 |
Product | cyanophycin synthetase |
Protein accession | YP_001793058 |
Protein GI | 171060709 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR02068] cyanophycin synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00000000502251 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCCTCA AAGAAGACAT CAAACTGCTG CGCATCAACT ACCTGCGCGG CCCCAACGTC TGGACCTACC GACCGGTGCT GGAAGTCTGG CTCGATCTCG GTGAGCTCGA AGACCATCCC TCCCACCTGC TGCCCGGTTT CAACGACCGG CTGACGGCGA TGCTGCCGGC GCTGGTCGAG CACCACTGCG GTGTCGGCGA GCGCGGCGGT TTCCTGCAGC GGCTGCAGGA AGGCACCTGG ATGGGCCATG TGCTCGAGCA CGTGGTGATC GAGCTGCTCA ACCTGTCGGG CATGCCGACC GGCTTCGGCC AGACCCGCAG CACCTCGCGG CGCGGCGTCT ACCGGATGGT GTTCCGGGCC CGCGACGAGC AGGTCGCCCG CACCGCGCTG GCCAACGCGC ATGCGCTGCT GATGGCGGCG ATCAACGACC AGCCGTTCGA CGTCGACGCC GCCGTCACGC AGGTGCGCGA GCGCATCGAC GAGTGCTTCC TCGGCCCCAG CACCGCCTGC ATCGTCGCCG CGGCGACCGA TCGGCGCATC CCGCACATCC GCCTCAACGA CGGCAACCTG GTGCAGCTCG GCTACGGCTC GGCGCAGCGC CGCATCTGGA CCGCCGAGAC CGACCTCACC AGCGCCATCG CCGAGGGCAT CGCCGGCGAC AAGGACCTGA CCAAGGCGCT GCTGCGCGCG GTCGGCGTGC CGGTGCCCGA AGGCCAGGTC GCCGCCGACC CGGCCGCCGC CTGGGAGATC GCGCAGGACA TCGGCCTGCC GGTGGTGGTC AAGCCGACCG ACGCCAACCA CGGCCGCGGC GTCAGCCTCG ACCTCGGCAA CCGGCAGGAC GTCGAATCCG CCTGGGGCGT GGCGCGCGCC GAAGGCAGCG AGGTGATCGT CGAACGCTAC GTGCGCGGCG ACGAGCACCG CGTGCTGGTC GTCGACGGAC AGGTGGTGGC CGCCGCCCGC GGCGAAAGCC TGTGGATCAC CGGCGACGGC CACGGCAGCG TCGTGCAGCT GATCGACAGC CAGCTCAACA TCGATCCGCG CCGCGGCGAC GCCGAGGAGT TCCCGCTCGA GACCATCCGC CTCGACCGCG AGCCGGTGAT CCGCCTGCTG CTGGAGCGCC AGGGCCTCGA CGGCACGTCG GTGCCGGAGG CCGGCCGGCG GATCCTGATC CAGCGCAACG GCAACGTCTC GATCGACTGC ACCGACCAGG TGCACCCCGA GGTCGAACAC GCCGTCTCGC TGGCCGCGCG GGTGATCGGC CTGGACATCG CCGGCGTCGA TCTGGTCTGC GAGGACATCT CGCGCCCGCT GCAGGAGCAG GGCGGCGCGA TCGTCGAGGT CAACGCCGGC CCCGGCCTGC TGATGCACCT GAAGCCGGCC GAAGGTACGC CGCGGCCGGT CGGCCAGGCG ATCGTCAACC ACCTGTTCGC CGAAGACGCT TCGGGCCGCA TCCCGATCGT CGGCATCGCC GGCTCGGTCG ACACCCACCG CATCGCCCGC CTGGTGGCGT GGCTGGTGCA CCTGAGCGGG CGCCACGTCG GCCTGGCCTG CGGCGACGGC CTGTTCCTCG GCAACCGCCA GGTCGAGCGG CGCGACGGCG CCAACTGGTC GGCCGGCCAC CGGCTGCTGA TCAACCGCGA GGTGCAGGCG GTGGTGCTCG AGAACGGTGC CGCCAGCATC CTGCAGGACG GCCTGGCCTA CGACCGCTGC CAGGTCGGCG TGATCACCGA CCTCGGTGGC GCCGAGGCCC TGGCCGCGCA CGACATCCAG ACCTCCGACC AGCTGGTGCG GGTGCTGCGA ACGCAGATGG ACGTGGTGCT GTCGGACGGC GTGGGCGTGC TCAACGCCGC CGACGAACGC ATCGCCGAAC TCGCCAGCCT GTGCGACGGC GAGGTGCTCC TCTACGCCGA CGACGGACAG AACGCCGCGC TGCGCGAACA CCGCGGCGCG GGCGGGCGGG CGGTGTTCCT GCGTGACCGG CGCCTGGTGC TGGCCACGGG CACCAGCGAG ACGCTCGGCC CGCCGCTGCA CAGCGGGCGC CGGCGCGGCG CGGCGCTCAG CGCCGGCGTG CTGCTGGCCG CCGTCGCCAC CGCCTGGGGC CTGGGCATCG CCCCCGAACT GATCGCCGCC GGCATCGAGA CCTTCGATCC CGACCTGGCC ATGACCGCCC CCGGCCAGCA CTGA
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Protein sequence | MSLKEDIKLL RINYLRGPNV WTYRPVLEVW LDLGELEDHP SHLLPGFNDR LTAMLPALVE HHCGVGERGG FLQRLQEGTW MGHVLEHVVI ELLNLSGMPT GFGQTRSTSR RGVYRMVFRA RDEQVARTAL ANAHALLMAA INDQPFDVDA AVTQVRERID ECFLGPSTAC IVAAATDRRI PHIRLNDGNL VQLGYGSAQR RIWTAETDLT SAIAEGIAGD KDLTKALLRA VGVPVPEGQV AADPAAAWEI AQDIGLPVVV KPTDANHGRG VSLDLGNRQD VESAWGVARA EGSEVIVERY VRGDEHRVLV VDGQVVAAAR GESLWITGDG HGSVVQLIDS QLNIDPRRGD AEEFPLETIR LDREPVIRLL LERQGLDGTS VPEAGRRILI QRNGNVSIDC TDQVHPEVEH AVSLAARVIG LDIAGVDLVC EDISRPLQEQ GGAIVEVNAG PGLLMHLKPA EGTPRPVGQA IVNHLFAEDA SGRIPIVGIA GSVDTHRIAR LVAWLVHLSG RHVGLACGDG LFLGNRQVER RDGANWSAGH RLLINREVQA VVLENGAASI LQDGLAYDRC QVGVITDLGG AEALAAHDIQ TSDQLVRVLR TQMDVVLSDG VGVLNAADER IAELASLCDG EVLLYADDGQ NAALREHRGA GGRAVFLRDR RLVLATGTSE TLGPPLHSGR RRGAALSAGV LLAAVATAWG LGIAPELIAA GIETFDPDLA MTAPGQH
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