| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_4030 |
|---|
| Symbol | |
|---|
| ID | 6161700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4512743 |
|---|
| End bp | 4513942 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641666810 |
|---|
| Product | acetyl-CoA acetyltransferase |
|---|
| Protein accession | YP_001793049 |
|---|
| Protein GI | 171060700 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00000182841 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAC AGATTCAAGA CGCCTACATC GTCGCCGCCA GCCGCACGCC GATCGGCCGT
TCGCACCGCG GTTTCTTCCG CAGCACCCGG CCGGACGACC TGCTCGTAGC CGCCTTGCGC
GGCGCTCTGG CGCAGGTGCC GACGCTCGAT CCGAAGGCGA TCGAGGACGC CATCATCGGC
TGCGCGATGC CCGAAGGCCC GCAGGGCCTG AACGTGGCGC GGGTGGCGGC GTTGCTGGCC
GGGCTGCCCA ACAGCGTCGG CGGCATCACG GTCAACCGCT TCTGCGCCTC GGGCCTGAGC
GCGATCCAGA TGGCGGCCGA CCGCATCCGC GTCGGCGAGG CCGAGGTCAT GATCGCCGGC
GGCTGCGAGA GCATGAGCAT GGTGCCGATG AGCGGCAACA TGCCGTCGTT CAACCCGGCG
ATCTTCGAGC GCGACGAGAA CGTCGGCATC GCCTACGGCA TGGGCCTGAC CGCCGAGAAG
GTGGCCAACC AGTGGAAGGT CGGCCGCGAG GCGCAGGACG CCTTTGCGCT GGCCTCGCAC
CAGAAGGCGC TGAAGGCGCA GGCGGCGGGT GATTTCGGCG CCGAGATCAC GCCGGTCGAC
GTGATCGAGC GCACGCCCGA CCTCGCCACC GGCGAGGTGC GCACGCGCAG CCGCACGGTC
AGCCTCGACG AGGGGCCGCG CGCCGACACC TCGATCGACG GCCTGGCCAA GCTGCGCACG
GTGTTCGCGG CCAAGGGCAG CGTCACCGCC GGCAACAGCT CGCAGACCAG CGACGGCGCC
GGTGCGCTGA TCCTGGCCAG CGAGCGCGCG GTGCGGCAGT ACAACCTGCA GCCGCTGGCG
CGTTTCGTCA GCTTTGCCAG CCGCGGCGTG CCGCCCGAGA TCATGGGCAT CGGTCCGATC
GAGGCCATCC CGGCGGCGCT GCGCAGCGCA GGGCTCAGCC TGTCGGCGAT CGACTGGATC
GAGCTCAACG AGGCGTTTGC GGCGCAGTCG CTGGCGGTGA TCCAGGGCGT CGGGCTCGAC
CCGGCCAAGG TCAACCCGAT GGGCGGCGCG ATCGCGCTCG GCCACCCGCT CGGCGCCACC
GGCGCGATCC GCGCCGCCAC CGTGGTGCAC GCGCTGCGCC GCCACAACCT GAAATACGGC
ATGTTGACGA TGTGCGTGGG CACGGGGCAG GGCGCGGCGG GCATCTTCGA ACGCGTCTGA
|
|---|
| Protein sequence | MSKQIQDAYI VAASRTPIGR SHRGFFRSTR PDDLLVAALR GALAQVPTLD PKAIEDAIIG
CAMPEGPQGL NVARVAALLA GLPNSVGGIT VNRFCASGLS AIQMAADRIR VGEAEVMIAG
GCESMSMVPM SGNMPSFNPA IFERDENVGI AYGMGLTAEK VANQWKVGRE AQDAFALASH
QKALKAQAAG DFGAEITPVD VIERTPDLAT GEVRTRSRTV SLDEGPRADT SIDGLAKLRT
VFAAKGSVTA GNSSQTSDGA GALILASERA VRQYNLQPLA RFVSFASRGV PPEIMGIGPI
EAIPAALRSA GLSLSAIDWI ELNEAFAAQS LAVIQGVGLD PAKVNPMGGA IALGHPLGAT
GAIRAATVVH ALRRHNLKYG MLTMCVGTGQ GAAGIFERV
|
|---|
| |