Gene Lcho_4009 details

Gene Information

• Locus tag: Lcho_4009
• ID: 6160520
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Leptothrix cholodnii SP-6
• Kingdom: Bacteria
• Replicon accession: NC_010524
• Strand: +
• Start bp: 4492286
• End bp: 4492804
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 641666789
• Product: hypothetical protein
• Protein accession: YP_001793028
• Protein GI: 171060679
• COG category: [S] Function unknown
• COG ID: [COG3165] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 12
• Fosmid unclonability p-value: 0.000000604567
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTTTCAAG CGCTGCTCGA ACCGCTGGGG CGCGAAGCCC TCGCGCGGCT CACCCTCCTG 
CTCAATCACG TGATCTCGGC CGAGCCCGAA GCCATGCGCC GTCTGGTCGG CCAGGCCGGC 
GGCAGCATCG GCATCGAATG GCAACGCTGG CCGGCCCTGC TGCCACCGCC GCCGCCCGCG 
GCCTGGCGCA TCACGCCCGC CGGCCTGCTC GAGCTGGACG ACGGCAGCGT CGCGCCCGCC 
AGCGGTGCCG CGCTGCTGGT CGGCCTGGAT CACCAGGCGC TGTTCGGCTG GCTGCTCGGC 
GGTGCGCGTG GCCGCCCGCC GATGGATGTT CATGGCGACG TGGCCCTGGC CGCCGAGGTG 
AGCTGGCTGG CCGAGAACCT GCGCTGGGAC ATCGAGGACG ACCTCGCCCG CGTGATCGGC 
GATGCGCCGG CACACCAGCT GGCGCAGGTC GGCCGCGCCA TCGCGCAGGG CGTGCAGGCC 
CTGGTGCAGC GCGTGCGCCC GGCGGCACCC GACGCGTGA 

 

Protein sequence

MFQALLEPLG REALARLTLL LNHVISAEPE AMRRLVGQAG GSIGIEWQRW PALLPPPPPA 
AWRITPAGLL ELDDGSVAPA SGAALLVGLD HQALFGWLLG GARGRPPMDV HGDVALAAEV 
SWLAENLRWD IEDDLARVIG DAPAHQLAQV GRAIAQGVQA LVQRVRPAAP DA