| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3982 |
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| Symbol | |
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| ID | 6161504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4469483 |
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| End bp | 4470286 |
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| Gene Length | 804 bp |
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| Protein Length | 267 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641666760 |
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| Product | monofunctional biosynthetic peptidoglycan transglycosylase |
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| Protein accession | YP_001793001 |
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| Protein GI | 171060652 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02070] monofunctional biosynthetic peptidoglycan transglycosylase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000102904 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGTGC TGAAGTCGCA CGCGGTGCGC CTGCTCGTGC TGCTGGTGCT CAGCGGCCTG
GCGCTGCAGC TGTTCTTCCT GGCGCGCATC ACGGCGATGC GCTGGATCGA CCCCGAGTCG
ACCGCCTTCC AGCGCAGCGA GATCTGGCGC CTGGTGAGCG AGCAGCATCA GCTGAGCTGG
AGCCAGCGCT GGGTGCCGTA CGAGCAGATC GCCGACTCGC TCAAGCGCGC CGTGATCGCC
AGCGAGGACG CCGGTTTCGT CGATCACAGC GGCGTCGAAT GGGACGCGAT CGAGAAGGCC
TGGACACGCA ACCAGCAGGC CGAGGCGCGC GCCGAGAAGC TCAACGAGGC GCGCCTGCGC
CGCGAGGAAC AGGCGGCGGC GCGCCGCAAG TCCGAGGCGG CCGCCAGCGC GCGCTCGCCC
CGGCTCGTGC AGCCCAAGGT GGTCGGCGGC TCGACCATCA GCCAGCAACT GGCCAAGAAC
CTGTTCCTGT CGGGCGAGCG CACCACGCTG CGCAAGGGCC AGGAGCTGCT GATCACGCTG
ATGCTGGAGA CGGCGCTGCC GAAGGCGCGC ATCCTCGAGA TCTACCTGAA CAACGTCGAA
TGGGGCGAGG GGCTGTTCGG CGCGCAGGCG GCGGCGCGGC ACTACTTCCA CATCGACGCC
GCCCGGCTCG GCGCCTACCA GGCCGCGCGC CTGGCGGTGA TGCTGCCGGC GCCCAAGCGC
TTCGAGAAGC GACCCGATTC GGCCTACGTG CTGGGTCGAT CGTCGACCGT CGCGGCGCGC
ATGGGGGCGG TCGAGCTGCC CTGA
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| Protein sequence | MKVLKSHAVR LLVLLVLSGL ALQLFFLARI TAMRWIDPES TAFQRSEIWR LVSEQHQLSW
SQRWVPYEQI ADSLKRAVIA SEDAGFVDHS GVEWDAIEKA WTRNQQAEAR AEKLNEARLR
REEQAAARRK SEAAASARSP RLVQPKVVGG STISQQLAKN LFLSGERTTL RKGQELLITL
MLETALPKAR ILEIYLNNVE WGEGLFGAQA AARHYFHIDA ARLGAYQAAR LAVMLPAPKR
FEKRPDSAYV LGRSSTVAAR MGAVELP
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