| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3979 |
|---|
| Symbol | |
|---|
| ID | 6161966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4465655 |
|---|
| End bp | 4466395 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641666757 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001792998 |
|---|
| Protein GI | 171060649 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.00235885 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTGA AAAACAAGGT TTCCATCATC ACCGGCGCGG CCCAGGGCAT CGGCCTGGCC
ACGGCGCTCA AGTTCGCCCG CGAAGGTGCG ATCGTGATCG TCTGCGACCT GCGCCAGGCC
GCGGTCGATG CGGCAGTGGC CCAGTGCCGC GAGCTGGGCG CGTTGGCCGA CGGCTTTGCG
CTCGACGTCA CCGACCGCAC GGCGGTCGAC GCGATGGTGG CCGCCGTCAA GGCCCGCCAC
GGCCGCATCG ACACGCTGGT CAACAACGCC GGCATCACGA AGGACGCGCG GCTGCAGAAG
ATGACGATCG AGCAGTTCGA CGCCGTGATC GACGTCAACC TGCGCGCGGT CTTCCACTGC
GCGCAGGCGG TGGCAGATAC GATGGTCGAG CAGGGCGCGG GCGTGATCCT GAACGCCAGC
AGCGTGGTCG GCATCTACGG CAACTTCGGC CAGACCAACT ACGCGGCCAC CAAATTCGGC
GTGATCGGCT TCACCAAAAC CTGGAGCCGC GAGCTCGGCC CCAAGGGCGT GCGGGTCAAT
GCGGTGGCGC CGGGTTTCAT CGAGACGCCG ATCCTCGCGA CCATCCCCGA CAAGGTGATG
GAGCAGATGC GCCACGACGT GCCGCTGCGC CGCCTGGGCA AGCCCGAGGA GATCGCCAAC
GTCTACGCCT TCCTGGCCAG CGACGAGGCC AGCTACATCA ACGGCACCGT GATCGAGGTG
GCAGGCGGGC TGACCGTCTG A
|
|---|
| Protein sequence | MRLKNKVSII TGAAQGIGLA TALKFAREGA IVIVCDLRQA AVDAAVAQCR ELGALADGFA
LDVTDRTAVD AMVAAVKARH GRIDTLVNNA GITKDARLQK MTIEQFDAVI DVNLRAVFHC
AQAVADTMVE QGAGVILNAS SVVGIYGNFG QTNYAATKFG VIGFTKTWSR ELGPKGVRVN
AVAPGFIETP ILATIPDKVM EQMRHDVPLR RLGKPEEIAN VYAFLASDEA SYINGTVIEV
AGGLTV
|
|---|
| |