Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3964 |
Symbol | |
ID | 6162389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | - |
Start bp | 4442204 |
End bp | 4445311 |
Gene Length | 3108 bp |
Protein Length | 1035 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641666742 |
Product | acriflavin resistance protein |
Protein accession | YP_001792983 |
Protein GI | 171060634 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.000156628 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAACGTTT CCGCCTGGTC GATCCGCAAC CCGCTGCCGG CGGTGCTGCT GTTCGTGCTG CTGACGCTCG GCGGCATGGC GAGCTTCCAC GCCATGAAGA TCCAGCAGTT CCCGGATCTG GAACTGCCCA CCGTCAGCAT CGTCGCCAGC CTGCCCGGCG CGTCGCCGTC GCAGCTCGAG ACCGAGGTGG CGCGCAAGAT CGAGAACGCG CTGGCCACGC TGCAGGGCTT GAAGCACATC TACACCAAGC TGCAGGACGG CACGGCCACC ATCACGGCCG AGTTCCGGCT CGAGAAGCCG ACGCAGGAGG CGGTCGACGA GGTGCGCGAT GCCGTCAACC GGGTGCGCTC CGACCTGCCC GGCGAGCTGC GCGAACCCAC CGTCAGCAAG CTCAACCTGG CCGGCGCGCC GGTGCTGACC TACACGGTGG CGACGTCGCG GCTCGATGAA GAGGGCCTGT CCTGGTTCGT CGACAACACC ATCACCAAGG CGCTGCTGAG CGTCAACGGC GTGGGCGCGG TGGCGCGGGT GGGCGGGGTC ACGCGCGAGG TGCGGGTCGA GCTCGATCCG GCACGGCTGC TGGCGCTGGG CGCCACCGCC GCCGACGTGT CGCGCCAGTT GCGCGCGGTG CAGCAGGACG CCGCGTCCGG CCGCGCCGAC CTGGGCGGCG CCGAGCAGGC GCTGCGCACG CTCGCCAGCG TGGCGTCGGC CGACGAGCTG GCGCGGCTGG AGATCGCGCT GGCCGACGGC CGCCACGTGC GCCTGGACCA GATCGCCACG GTGCTCGACA CCGTCACCGA GCCGCGCAGC GCGGCGCTGC TCAACGGCAA ACCGGTGGTC GGTTTCGAGA TCAGCCGCAG CCGCGGCGCC AGCGAGGTCG AGGTGGCGCA GGGCGTGCAG CGCGTGCTCG ATCAGCTGCG GCTGGCGCAC CCGGACCTGC AGTTCGAGCA GGCCTTCAAC CTGGTCGACC CGGTGATCGA GAACTACGAC GGCTCGCTGG CGCTGCTGTA CGAGGGCGCG ATCCTGGCCG TGATCGTGGT CTGGTTCTTC CTGCGCGACT GGCGCGCCAC GCTGGTGGCT GCGACCGCGC TGCCGCTGTC GGTGATCCCG GCCTTCATCG GCATGTGGGC GCTCGGGTTC AGCGTCAACG TGGTGACGCT GCTGAGTCTG TCGCTGGTGG TGGGCATCCT GGTCGACGAC GCGATCGTCG AGATCGAGAA CATCGTGCGC CACCTGAAGA TGGGCAAGAG CCCGTACCAG GCGGCGATGG AGGCGGCCGA CGAGATCGGC CTGGCGGTGA TCGCCACCAC CTTCACGCTG ATCGCGGTGT TTTTGCCGAC CGCCTTCATG GCCGGCATCC CGGGCAAGTT CTTCAAGCAG TTCGGCTGGA CCGCGTCGCT GGCGGTGTTC GCCTCGCTGG TGGTGGCGCG GGCGCTGACG CCGATGATGG CGGCCTACCT GCTCAAGCCG ATCGTCGTCA GCGGCGAAGA GCGCGACGGC CGCGTGATGA GCACCTATCT GCGCATGGCA GCCTGGTCGG TGCGGCACCG CATCGTCACC GTGCTGGGCG CGGCGGCGTT TTTTGTCGGC TCGCTGATGC TGATCCCGCT GCTGCCGACC GGCTTCATCC CGCCCGACGA CTTCGGCCAG AGCCAGGTCA CGGTCGAGCT GCCACCCGGC AGCACGCTGC ACGACACCTA TGCCGCGGCC GAGCAGGCGC GTGCGATCGT CGGCGCGCAC CCGCACGTCA CGCGCATCTA CACCGCCATC GGCGGCGGTG CGACCGGCAG CGATCCGTTT GCCGGTGGCG GCGCGGCCGA AGTGCGCAAG GCCAGCCTGA CGCTCAACCT GACCGCCCGC GAAGACCGTC CCGGCGTGCG CAAGCAGGCC ATCGAGATGG AGCTGCGCGA GGCCATGAAA CAGCTGCCCG GCGCACGCGT GACGGTCGGC CTGGGCGGCT CGGGCGAGAA GTACGTGCTG GTGCTGTCGG GCGACGACGG CGCCACCCTG CTGCAGGCCG CGCGCGCGGT CGAACAGGAC CTGCGCCGCG TTCCCGGCCT GGGCAACATC AGCTCGACCG CCAGCCTGGT GCGCCCGGAG CTGGTGCTGC GGCCGGACGT GGCGCGCGCC GCCGAGGCCG GCGTCACCAC CGGGCGAATA GCCGACACGC TGCGCATCGC CACCAGCGGC GACTTCGACG CCAGCCTGCC CAAGCTCAAC CTGAGCCAGC GCCAGGTGCC GATCGTGGTG CGCCTGCCCG AGTCGGCGCG GCAGGACCTG GCGCTGCTGC AGCAGCTCAC CGTGCCGGGC AAGGGCGGCC AGCCGATCGC GCTGTCACAG GTCGCGAGCT TCGGCATGGA AAGCGCGCCG GCCCAGATCG ACCGCTACGA CCGCCAGCGC AACATCAACT TCGAGGTCGA GCTCAACGGC CGTCCGCTCG GCGACGTGGC GGCCGAGGTG GCTGCCCTGC CGAGCCTGCA GCAGCTGCCG GCCGGTGTCA GCCAGGCCAC GCTCGGTGAC GCCGAGGTGA TGGCCGAGCT GTTCGCCAGC TTCGGCCTGG CGATGCTGAC CGGCGTGCTG TGCATCTACC TGGTGCTGGT GCTGCTGTTC AAGGGCGTGA TGCAGCCGGT GACGATCCTG GCCGCGCTGC CGCTGAGCCT GGGTGGCGCG TTCGTCGCGC TGCTGGCGAC CAACAGCGCG TTTTCGATGC CGTCGCTGAT CGGCCTGATC ATGCTGATGG GCATCGCCAC CAAGAACTCG ATCCTGCTGG TCGACTACGC CATCCTGGCG CGCCGCGCCG GCATGCCGCG CCGCGAGGCC CTGCTCGACG CCTGCCACAA GCGCGCTCGA CCGATCGTCA TGACGACCAT CGCGATGGGC GCGGGCATGT TGCCGATCGC GCTCGGCTGG GGCACCGATC CGAGCTTTCG TGCGCCGATG GCGATCGCGG TGATCGGCGG GCTGATCACC TCCACGGTGC TGAGCCTGCT GGTGATTCCG GTGGTCTACA CCTATGTCGA CGACGCGGTG CAGTTCGGCC TGCGCCTGCT GCGCCGCGTG CGTGGCGTGG CGCCGGGGCA GGCGGTCATC GAGCCGCCGC CCCCTTGA
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Protein sequence | MNVSAWSIRN PLPAVLLFVL LTLGGMASFH AMKIQQFPDL ELPTVSIVAS LPGASPSQLE TEVARKIENA LATLQGLKHI YTKLQDGTAT ITAEFRLEKP TQEAVDEVRD AVNRVRSDLP GELREPTVSK LNLAGAPVLT YTVATSRLDE EGLSWFVDNT ITKALLSVNG VGAVARVGGV TREVRVELDP ARLLALGATA ADVSRQLRAV QQDAASGRAD LGGAEQALRT LASVASADEL ARLEIALADG RHVRLDQIAT VLDTVTEPRS AALLNGKPVV GFEISRSRGA SEVEVAQGVQ RVLDQLRLAH PDLQFEQAFN LVDPVIENYD GSLALLYEGA ILAVIVVWFF LRDWRATLVA ATALPLSVIP AFIGMWALGF SVNVVTLLSL SLVVGILVDD AIVEIENIVR HLKMGKSPYQ AAMEAADEIG LAVIATTFTL IAVFLPTAFM AGIPGKFFKQ FGWTASLAVF ASLVVARALT PMMAAYLLKP IVVSGEERDG RVMSTYLRMA AWSVRHRIVT VLGAAAFFVG SLMLIPLLPT GFIPPDDFGQ SQVTVELPPG STLHDTYAAA EQARAIVGAH PHVTRIYTAI GGGATGSDPF AGGGAAEVRK ASLTLNLTAR EDRPGVRKQA IEMELREAMK QLPGARVTVG LGGSGEKYVL VLSGDDGATL LQAARAVEQD LRRVPGLGNI SSTASLVRPE LVLRPDVARA AEAGVTTGRI ADTLRIATSG DFDASLPKLN LSQRQVPIVV RLPESARQDL ALLQQLTVPG KGGQPIALSQ VASFGMESAP AQIDRYDRQR NINFEVELNG RPLGDVAAEV AALPSLQQLP AGVSQATLGD AEVMAELFAS FGLAMLTGVL CIYLVLVLLF KGVMQPVTIL AALPLSLGGA FVALLATNSA FSMPSLIGLI MLMGIATKNS ILLVDYAILA RRAGMPRREA LLDACHKRAR PIVMTTIAMG AGMLPIALGW GTDPSFRAPM AIAVIGGLIT STVLSLLVIP VVYTYVDDAV QFGLRLLRRV RGVAPGQAVI EPPPP
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