Gene Lcho_3876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3876 
Symbol 
ID6163446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4349225 
End bp4350013 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content69% 
IMG OID641666654 
Productindole-3-glycerol-phosphate synthase 
Protein accessionYP_001792895 
Protein GI171060546 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0134] Indole-3-glycerol phosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones59 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGACA TCCTGAACAA GATCGTCGCG ACCAAACACG AGGAAATCGC CGCGGCGCGT 
GCGCATCGTG GCCTGGTCTC GTTGCGCGAC GAAGCCGAAG CCCGCACCGA CGTGCGCGGC
TTCGAGGCGG CCATGCGCGC CAAGATTGCG GCGGGCCAGG CGGCGGTGAT CGCCGAGGTC
AAGAAGGCCA GCCCGAGCAA GGGCGTGCTG CGCGAGGATT TCCGCCCGGC CGAGATCGCC
GCGAGCTACG AGCGCCACGG CGCCGCCTGC CTGAGCGTGC TGACCGACGC GCTCTATTTC
CAGGGCTGCG CCGACTACCT GCGTCAGGCC CGCGCGGCCT GCGCGCTACC GGTGCTGCGC
AAGGATTTCA TGGTCGACGA GTACCAGGTG CACGAGGCCC GCGCGATGGG CGCCGACGCC
ATCCTGCTGA TCGCGGCCTG CCTCGACGAC GCGCAGATGG CCGATCTGGA GGCGGTGGCG
CTGGCGCACC GCATGAGCGT GCTGGTCGAG GTGCACGATC GTGACGAACT GCAACGTGCG
CTGCGCCTGA AGACGCCACT GCTGGGTATC AACAACCGCA ATCTGCGCAC CTTCGAGGTC
ACGCTCGACA CGACGCTGGG CATGCTCGGA GAGGTGCCGT CGGATCGCCT GCTGGTCACC
GAATCGGGCA TCCTGGGGCG TGACGACGTG CAGCGCATGC GCGCGGCCCA GGTGCATGCC
TTCCTGGTCG GCGAGGCCTT CATGCGCGCG TCGGATCCGG GCGTGGCGCT GGCCGCGCTG
TTTGCCTGA
 
Protein sequence
MSDILNKIVA TKHEEIAAAR AHRGLVSLRD EAEARTDVRG FEAAMRAKIA AGQAAVIAEV 
KKASPSKGVL REDFRPAEIA ASYERHGAAC LSVLTDALYF QGCADYLRQA RAACALPVLR
KDFMVDEYQV HEARAMGADA ILLIAACLDD AQMADLEAVA LAHRMSVLVE VHDRDELQRA
LRLKTPLLGI NNRNLRTFEV TLDTTLGMLG EVPSDRLLVT ESGILGRDDV QRMRAAQVHA
FLVGEAFMRA SDPGVALAAL FA