Gene Lcho_3818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3818 
Symbol 
ID6160442 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand
Start bp4282746 
End bp4283912 
Gene Length1167 bp 
Protein Length388 aa 
Translation table11 
GC content65% 
IMG OID641666591 
Productcytochrome c oxidase, subunit II 
Protein accessionYP_001792837 
Protein GI171060488 
COG category[C] Energy production and conversion 
COG ID[COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2
[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID[TIGR02866] cytochrome c oxidase, subunit II 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.198752 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCTC TGTGGCGGCA CGCTGGACAA GTCAGTCTGG CCGTGGGCGC CTCGCTGGCC 
GTGCAAGCGG CTCACGCGGT CAACGATCTG CCCGGCGGCC CCGGCGTGCG CCAGCTCGAT
CTGCCGGTCG GCGCCAGCAA GATGTCCGCC GACCTGCACT CGCTGCACTG GATCATGATG
GTCATCTGCA CGGTGATCTT CCTGGCCGTG TTCGGCGTGA TGTTCTATTC GATCATCAAG
CACCGCAAGT CCAAGGGCCA CAAGCCGGCC AACTTCCACG AGAGCGTGGC CGTCGAGATC
GCCTGGACGA TCGTGCCGTT CGTGATCGTG ATCGGCATGG GCGCGATGGC CACCAAGACG
GTGGTCGCGC AGAAGGACAC CACCAACGCC GACCTGACCA TCAAGGCCAC CGGCTACCAG
TGGAAGTGGG GCTACGACTA CCTCAAGGGC GAAGGCGAAG GCATCGCCTT CCTGTCGACG
CTCGACACCA GCCACCGCGC GATGTCCGAT TCGGGCAAGC CCGAAGCGAT CGACAACTAC
CTGTTGAAGG TCGACAACCC GCTGGTGGTG CCGGTCGACA AGAAGATCCG CATCATCACC
ACCGCCGACG ACGTGATCCA CGCCTTCATG GTGCCGCAGT TCGGCATCAA GCAGGACGCC
ATCCCCGGCT TCGTGCGCGA CACCTGGTTC CGCGCCGACA AGGTCGGCGA CTTCTACGGC
CAGTGCGCCG AGCTGTGCGG CAAGGAACAC GCCTACATGC CGATCCACGT GAAGGTGCTC
TCGGCGGTCG ACTACAGCGC CTGGGTCGAC GGCGAGAAGA AGAAGCTCGC CGCCCTGGCC
GATGATCCGG CCAAGGTCTG GAAGCTCGAC GAGCTGGTCG CCCGCGGCGA GAAGGTCTAC
GCCGCCAACT GCGCCGCCTG CCACCAGGCC AACGGCAAGG GTGCCGGCCC GATCAAGGCG
GTCGACGGCT CGCCGGTGGT GCTCGACGCC GACAAGACCC GGCAGATCGC GGTGCTGCTG
AACGGCCAGA ACAACGGCGC AATGCCGGCC TGGAAGCAGC TCTCGGACAC CGAGATCGCC
GCCGTCATCA CCTACACCAA GAACAACTGG TCGAACAAGA CCGGTCAGAT CGTGCAGCCG
GCCGACGTGG TCGCGGCCCG CAAGTAA
 
Protein sequence
MNALWRHAGQ VSLAVGASLA VQAAHAVNDL PGGPGVRQLD LPVGASKMSA DLHSLHWIMM 
VICTVIFLAV FGVMFYSIIK HRKSKGHKPA NFHESVAVEI AWTIVPFVIV IGMGAMATKT
VVAQKDTTNA DLTIKATGYQ WKWGYDYLKG EGEGIAFLST LDTSHRAMSD SGKPEAIDNY
LLKVDNPLVV PVDKKIRIIT TADDVIHAFM VPQFGIKQDA IPGFVRDTWF RADKVGDFYG
QCAELCGKEH AYMPIHVKVL SAVDYSAWVD GEKKKLAALA DDPAKVWKLD ELVARGEKVY
AANCAACHQA NGKGAGPIKA VDGSPVVLDA DKTRQIAVLL NGQNNGAMPA WKQLSDTEIA
AVITYTKNNW SNKTGQIVQP ADVVAARK