Gene Lcho_3756 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_3756 
Symbol 
ID6164026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp4213950 
End bp4214627 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content68% 
IMG OID641666529 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_001792775 
Protein GI171060426 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCACC GCATCGCCCC CAGCATTCTT TCGGCCGACT TTGCCCGCCT GGGCGAGGAA 
GTTCGCAACG TGCTGGCCGC GGGTGCCGAC TGGATCCATT TCGACGTGAT GGACAACCAT 
TACGTGCCCA ACCTGACCTT CGGGCCGATG GTCTGCCAGG CGCTCAAGAA ACACAGCGTC 
AAGCCCGACG GCCGGGCCTG CCCGATCGAC GTGCACCTGA TGGTGCAGCC GGTCGACGAG 
CTGGCACTGG CGTTCGCCAA GGCCGGTGCC GACCTCATCA GCTTCCACCC CGAAGCCAGC 
GCGCACGTCG ACCGCACGCT GCAGCTGATC AAGGGCGCCG GCTGCCAGGC CGGCCTGGCC 
TTCAACCCGG CCAGCAGCCT CGACGTGCTC GAGTACGTGA TCGACCGCGT CGACCTGATC 
CTGATCATGA GCGTCAACCC CGGCTTCGGC GGCCAGAGCT TCATCGACAG CGCGCTGCGC 
AAGATCGAAC GCGCCCGCCG GCTGATCGAG GCCACCGGCC GCGACATTCG CCTGGAGGTC 
GACGGCGGCG TCAAGGTCGA CAACATCCGC CGCATCGCCG ACGCCGGCGC CGACACCTTC 
GTGGCCGGCA GCGCGATCTT CAGCCAGGCC GAATACCGCG GCGTGATCGA CGCGATGCGC 
ACCGAGCTGG GCCGCTGA
 
Protein sequence
MQHRIAPSIL SADFARLGEE VRNVLAAGAD WIHFDVMDNH YVPNLTFGPM VCQALKKHSV 
KPDGRACPID VHLMVQPVDE LALAFAKAGA DLISFHPEAS AHVDRTLQLI KGAGCQAGLA 
FNPASSLDVL EYVIDRVDLI LIMSVNPGFG GQSFIDSALR KIERARRLIE ATGRDIRLEV 
DGGVKVDNIR RIADAGADTF VAGSAIFSQA EYRGVIDAMR TELGR