| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3753 |
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| Symbol | |
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| ID | 6164023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 4209745 |
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| End bp | 4211772 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641666526 |
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| Product | transketolase |
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| Protein accession | YP_001792772 |
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| Protein GI | 171060423 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0021] Transketolase |
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| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACGA CTCTTCCTCT GGCCACCGAG ATGGCCAACT CATTGCGCGC ACTGGCGATG
GACGCGGTGC AGAAGGCCAA CTCCGGCCAC CCCGGCGCGC CGATGGGCAT GGCCGAGATG
GCGGTGGCGC TGTGGGGCCG CCATCTGCGC ATCAACCCGG CCGATCCGCA TTGGCCCGAC
CGCGACCGTT TCGTGCTGAG CAATGGCCAC GCCTCGATGC TGCTGTACGC GCTGCTGCAC
CTGAGCGGCC ACGACCTGTC GATCGATGAC CTGAAGGCCT TTCGTCAATT GCGCAGCCGC
ACGCCGGGCC ACCCGGAAGT CGGCTTGACG CCGGGTGTCG AAACCACCAC CGGCCCGCTC
GGCCAGGGCC TGACGAATGC GGTCGGTTTT GCCTTGGCCG AGAAGCTGCT GGCGCGCGAA
TTCAATCGCC CGGGCCATGA CATCGTCGAT CACCGGACCT ATGTGTTTCT CGGTGACGGC
TGCCTGATGG AAGGCATCAG CCAGGAGGCG ATCTCGCTGG CCGGCGTGTG GGGTCTGAAC
AAGCTGGTGG CGCTGTACGA CGACAACGGC ATCTCGATCG ACGGCCCGGT GCAGGGCTGG
TTTGCCGACG ACACCGCCTT GCGTTTCAAG GCCTGCGGCT GGAACGTGAT CGGCACGCTC
GATGGCCACG ATGTCGACGC CGTCGACCAG GCGATCGCGC AGGCGCAGCA CAGCAGCGAG
CGGCCGACGC TGATCATCTG CCGCACCCGC CTCGGTCACG GTTCACCGAA TCGCGCCAAC
ACCGCCCGCG CGCACGGCGA GCCGCTCGGC GCCGCCGAGA TCGCCGCCAC CCGTGCGGCG
ATCGGCTGGC CGCATGCGCC GTTCGAGGTG CCCGAATCGC TGCGAGCGGC CTGGGATGCA
CGTGAGCGCG GTGCTGCCCT GCAGCAGCAA TGGGCCGAGC GCCTGACGGC TTATCGCGCC
GCACACCCGG CGCTGGCGGC GGAGTTCGAG CGCCGTGTGC GCGGTGATCT GCCGGCCGAT
TTCGAGGAGA CGCTGCTCAA CGCGATGCTG CAGTTCGGCC AGTCGCGCGA CAGCGTGGCC
AGCCGCAAGG CCTCGCAGCA GGTGCTCGCC GCGCTTGCGC CGCGTGTGCC CGAACTGCTC
GGCGGATCGG CCGACCTGAC GGGCTCGAAC CTGACCGATT TCCCCGGCTG CGGCGCGGTG
CGCGGCGGCG AGTTCGGCGG CCGCCACGTG CATTACGGCG TGCGCGAGTT CGGCATGGCC
GCGATCATGA ACGGCATCGC GCTGCACGGC GGCTTCATCC CGTACGGCGG CACCTTCCTG
ACCTTCAGCG ACTACAGCCG CAACGCCGTC CGCATGGCCG CGCTGATGAA GCTGCGCGTG
GTGCACGTGT TCACGCACGA CTCGGTCGGC CTGGGTGAAG ACGGCCCGAC GCACCAGCCC
GTCGAACACG CGGCGAGCCT GCGGCTGATC CCGGGGCTCG ACGTCTGGCG CCCGTGCGAC
GCGGCCGAAA CCGCGGTCGC CTGGACCCAC GCGCTGCAGC AGGCGCAGCG GCCGAGCGCG
CTGCTGCTGT CGCGCCAGAA CCTGCCGGCG CAGCTGCGCG AGCCCGAGCA GCTGGTGGCG
ATCCGGCGCG GTGCTTATGT GCTGAGCGAC CGGCCGCAGC CGCAGGCGGT GCTGCTGGCC
ACCGGCTCCG AGGTCGGCCT GGCGATGGCG GCGCAGCAGT TGCTCGATGG CCGTGGCATC
AGCGTGCGAG TGGTGTCGTT GCCGTGCACG ACGCTGTTCG ACCGGCAGGA CCGCGCCTGG
CGCGATGCGG TGCTGGGCCG CGGCCTGCCG CGGATCGGTG TCGAGGCGGG GGTGTCGCGC
TGGTGGGGCC AGTACGGCTG TTGCGCCGCC TTGGGCATCG ACCGCTTCGG CGAGTCCGGC
CCGGGGCCGG CGGTGTTCGA GCACTTCGGC TTGACGGCCG CGGCGCTGGC CAGCCTGGTC
GAACGCGAGA TCGATGCCGC GCGAGCGCCG CTCGCCGCCA GCCTCTGA
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| Protein sequence | MNTTLPLATE MANSLRALAM DAVQKANSGH PGAPMGMAEM AVALWGRHLR INPADPHWPD
RDRFVLSNGH ASMLLYALLH LSGHDLSIDD LKAFRQLRSR TPGHPEVGLT PGVETTTGPL
GQGLTNAVGF ALAEKLLARE FNRPGHDIVD HRTYVFLGDG CLMEGISQEA ISLAGVWGLN
KLVALYDDNG ISIDGPVQGW FADDTALRFK ACGWNVIGTL DGHDVDAVDQ AIAQAQHSSE
RPTLIICRTR LGHGSPNRAN TARAHGEPLG AAEIAATRAA IGWPHAPFEV PESLRAAWDA
RERGAALQQQ WAERLTAYRA AHPALAAEFE RRVRGDLPAD FEETLLNAML QFGQSRDSVA
SRKASQQVLA ALAPRVPELL GGSADLTGSN LTDFPGCGAV RGGEFGGRHV HYGVREFGMA
AIMNGIALHG GFIPYGGTFL TFSDYSRNAV RMAALMKLRV VHVFTHDSVG LGEDGPTHQP
VEHAASLRLI PGLDVWRPCD AAETAVAWTH ALQQAQRPSA LLLSRQNLPA QLREPEQLVA
IRRGAYVLSD RPQPQAVLLA TGSEVGLAMA AQQLLDGRGI SVRVVSLPCT TLFDRQDRAW
RDAVLGRGLP RIGVEAGVSR WWGQYGCCAA LGIDRFGESG PGPAVFEHFG LTAAALASLV
EREIDAARAP LAASL
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