Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Lcho_3707 |
Symbol | |
ID | 6162807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leptothrix cholodnii SP-6 |
Kingdom | Bacteria |
Replicon accession | NC_010524 |
Strand | + |
Start bp | 4146630 |
End bp | 4147943 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 641666480 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001792726 |
Protein GI | 171060377 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.00914113 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAAGACAC TGCCGCCCTC CTCCGCAACC GCCGCCGCGC TGTCCGACCT GCTCGGCAAC GATGCCGGCC CATCCCGCTG GCGCCGAAGC GTGCCCTGGC TGATCGGCAC CGTGCTGATC GCCGCCGCCG GCGCGGGCCT GTGGTTCGCC TTCGGTCCGT CGCAGACCGC CCCGGTGCGC TACACCACCG AGCCGCTGGC GCGTGGCGAC CTGGCGCTGA CCGTCACCGC CAACGGCAAG ATCCAGCCGA CCCGCTCGGT CAGCATCGGC AGCGAGCTGT CGGGCATCGT CGCGCGGGTG CGGGTGGACG TGAACGACCG CGTCAAGAAG GGCCAGGTGC TGGTCGAGCT CGACACCGCC AAGCTGCTCG ACCAGATCAC CCGCACCCGC GCCAGCCTCG CCGCCGCGCA GGCCGGCGTG GCGCAGGCCG CCGCCGCCGC CAAGGAGTCG CGCGCCAACC TGGCGCGGCT CGAAGAAGTG CAGCGCCTGT CGGGCGGCCA GGTGCCGGCG CCGGCCGAGA TGGACAGCGC GCGCGCCGCG CTCGACAAGG CGATCGCCGA GCAGGCCAGC GCCCAGGCCG CGGTGGCGCA GGCCCGCGCC ACGCTCAGCA CCGACGAGAC CAACCTCGGC CGCGCCTCGA TCCGCTCGCC GATCGACGGC GTGGTGCTGA CGCGCTCGGT CGACCCCGGC AACGCGGTGG CAGCGTCGCT GCAGGCGGTC ACGCTGTTCA CGCTGGCGGA GGATCTGACG CAGCTGCAGC TGTCGGTCAA CGTCGATGAA GCCGACGTGG CGCAGGTGCA GGACGGCCAG AGCGCCAGCT TCACCGTCAG CGCCTGGGCC GGGCGGCGTT ATCCGGCGAC GGTGACGCGG GTGGCCTACG GCTCGACGCT GACCGACAAC GTCGTCACCT ACACCACGCT GCTGAGCGTG GACAACGCCG ACCTCAGCCT GCGCCCGGGC ATGACCGCGG TGGCCACCAT CGCCACCAAC GAGCGCCGGC AGGTCTGGCT GGTGTCCAAC CGGGCGCTGC GCTACAGCCC AGGCAACGGC ACGGCATCGG CACCCAGCCG CAGCGTGGTC TCGCAACTGA TGCCGCGCAT CCCCGGCTCG AACCGGCCGC GCAGCGCCAC CACCGCCGCG CCGGTGGCCG GCCAGGCCGG GCGCATCTGG GTGCAGGAAG GCAGCGCCGC GCCACGCGCC ATCACCGTCA GCATCGGCCT GAGCAACGGC CGGCAGACCG AAGTGAGCGG CGAGGAACTG CGCGAAGGCC TGCAGGTGCT GACCGGTGAA ACGAGCGCGG GGGCGCAGCC ATGA
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Protein sequence | MKTLPPSSAT AAALSDLLGN DAGPSRWRRS VPWLIGTVLI AAAGAGLWFA FGPSQTAPVR YTTEPLARGD LALTVTANGK IQPTRSVSIG SELSGIVARV RVDVNDRVKK GQVLVELDTA KLLDQITRTR ASLAAAQAGV AQAAAAAKES RANLARLEEV QRLSGGQVPA PAEMDSARAA LDKAIAEQAS AQAAVAQARA TLSTDETNLG RASIRSPIDG VVLTRSVDPG NAVAASLQAV TLFTLAEDLT QLQLSVNVDE ADVAQVQDGQ SASFTVSAWA GRRYPATVTR VAYGSTLTDN VVTYTTLLSV DNADLSLRPG MTAVATIATN ERRQVWLVSN RALRYSPGNG TASAPSRSVV SQLMPRIPGS NRPRSATTAA PVAGQAGRIW VQEGSAAPRA ITVSIGLSNG RQTEVSGEEL REGLQVLTGE TSAGAQP
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