| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3703 |
|---|
| Symbol | |
|---|
| ID | 6162803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 4139963 |
|---|
| End bp | 4143028 |
|---|
| Gene Length | 3066 bp |
|---|
| Protein Length | 1021 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641666476 |
|---|
| Product | Hpt sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001792722 |
|---|
| Protein GI | 171060373 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0219575 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGCC GGCAGACCCT GGCGCGCCGG CTGCTCTATT CGATGCTGCC GTGGTACCTG
CTGCTGTCGC TGACGGTCAC CGGGGTGCAG ATGGCGATCC AGACCGTCAC GGTGCGCGCG
GCCATCGTCG ACGATCTGGC CTCGCTGGGC CGCACGGTCG AGCCGGGCAT CACCGACGCG
GTCTGGGAGC TCGACATACC GCGGCTGGCG GCGCTGTCGC GCGGCGTGCG GCAGAACGCC
ATCGTCACCG CCGTGCAGGT GCGCAGTGAC AACGGCGCGC TGCTGGTCAG CGACGGCGAA
CTGCCCGACG CCGCGGCCTT GCCTGCCGGT CCGGGCGGCG TGTCGGCCGC CCACGCCTGG
CAGACGGTGC CGCTGGCGCG TGCCGTGTCG ACGCGCCCGG CGCGGCTGAT CGGCCACCTG
CACCTGTATT CGGGCCCGCA GGTGCTGTGG GACCGCACCA AGTACGGCCT GCTGGTGGTG
CTGCTGAACT CGATCGTCGT CACCACCGGG CTGTGGCTGA TGTTCTCGTG GACCGTGCGT
CACCGCCTGT CCAAGGAGGT CACGCGCATG GCCCGGACGG TGGCGGGCTG GCGCTACCGC
AAGGACGAGA CGACGCCGGT CGAGGCGATC GCCTATCCGT ATCCGGACGA GCTCGGCGCG
CTGGTCGATG CGCTCAACGA CAGCCAGGCG CGGCTGCACG ACTCGATGCG CCGGCTCGAT
GCGCTCAACC AGAACCTCGA GCACAGCGTG GCCGAGCGCA CCGTCGAGCT GCAGCGCGCC
ACCGACGTGG CCGAGGCGGC GAGCCGGGCC AAGGGCGAGT TCCTGGCCAA CATGAGCCAC
GAGATCCGCA CCCCGATCAA CGCGATCCTG GGCATGCTGT ACCTGGCGCT CAAGAGCGAT
CTGGCGCCGT CGGTGCGCAA CTACCTCGGC AAGGCGCAGA ACGCGGCGCA TGCGCTGCTG
GGCGTCATCA ACGACATCCT CGACCTGTCG AAGATCGAGG CCGGCAAGCT CGACATCGAA
CGCGTCGAGT TCAGGCTCGA CGGCGTGCTG GAAATGCTCA CCGACGCGGT CGGCCACCAG
GCGGCGCACA AGGGCATCGA GTTCCTGATC CGCTACGACC CGGCGATCCC GCCGGCCCTG
ATCGGCGACC CGCTGCGGCT GGGCCAGGTG CTGCTCAACC TGTGCGGCAA CGCCGTCAAG
TTCACCGAAC ACGGCGAGGT CGAGCTGGCG TTCCGGGCCC TGCCCAGCCG CCCCGGCGAG
ATCACCGTGC AGGTCAACGT GCGCGACACC GGCATCGGCA TCGCCCCCGA GGTGCAGCAC
CGGCTGTTCG AGAAGTTCAG CCAGGCCGAC CAGAGCACCA CCCGCCGCTT CGGCGGCACC
GGCCTGGGCC TGGCGATCAG CAAGCAGCTG GTCGAGCTGA TGGGCGGGCG GATCTGGATC
GAGGACACCC TGCCCGGCCG CGGCACGACG ATGTGCTTCA CCCTGCCGCT GCGCATCGCC
GCCGAGAGCC GCGCACACCG GCTCGACCGG GTCGAGCAGG TCGGGCCGCT GCTCAAGGGC
GTGCGGGTGC TGGTGGTCGA CGACAACGAC GTCTCGCGCG AGATCATGGC CGAGATGCTG
CGCTACTTCC AGCTCGACGT CGGCGTCGCC GCGGGCGGCG AGGCGGCGCT GGCGGCACTG
CGGGCCGCGA CCGAGCATCC CTACGACCTG GTGCTGATGG ACTGGCGCAT GCCCGGCATG
AACGGCGACG AGGTCACGCA GCGCCTGCAC GTCGACCCGC AGATCCGCTC GCAGCCCAAG
GTCGTCATGG TGACGGTGCA CGGCCGCGAG CAGGTGGTGC GGCTGGCCGA GCAGGCGGGC
GTGGACGGGT TCCTGATCAA GCCGGTTTCG CCGTCGACCC TGCTCGACAC CCTGCTGTCG
GTGCTGGGTC GCGGCCGCCT GTTCGGCTCG ACCGACGCGG CGGGGCCGGC GGTGCCGTCG
GCCGGCGCGG GGCAGCTGGC CGGCGCGCAG CTGCTGCTGG TCGAGGACAA CGACATCAAC
CGCGAATTCG CCAGCGAGTT CCTGCGCAGC GAAGGCATCG AGGTCGACGA GGCGGTCGAC
GGCGCGCAGG CGCTCGAGCG CGTGCAGCAG CAGGCCTACG ACGCCGTGCT GATGGACATC
CAGATGCCGG TGATGGACGG ACTCGAGGCC GCGCGAGCCA TCCGCGCGCT CGGCGCCCAG
CCCGGCCACG AGCGGCTGGC CACCCTGCCG ATCATCGCGA TGACGGCGCT TGCCATGGCG
CAGGACGCCC AGCGCAGCCG GGCGGCGGGC ATGAACGACC ATGTCACCAA GCCGATCGCG
CCCGATCGCC TGCTGAGCGT GCTGACGCGC TGGGTGCAGC TGCCGGCCGG GCGGCGCGGC
CGCATGCCGC TGCCCGCCGC TGCATCCGCG CCGGCCTTGC CGGCCGATCT GGCCGCCCTG
GCGAGCCTGG ACGCGCACGA GGGCGTGCGC CGCATCGGCG GCAAGGTCGA GGCCTATCGC
CGCCAGCTGC GCCGCTTCCG CGAAAACCAC GCGGATGCGG TCGTCGAACT GCGCCGGCTG
CTCGAACGCG ACGACGAGGT GGCCGCCGAG ACCGCCTGCC ATGCGCTCAC CGGCGTGGCC
GGCAACATCG GCGCGGTGGC GTTGCACCAG CTGCTGGTGG AGGTCGATGC GCAGCTCAAG
CGCCGGATCC GGCCCGACGC GCCGATGCTC GACCGGCTCG AGGCCGCGCT GCGGCAGGTT
CACGCCGACA TCGACGCGCT GGCGCAACCC GGCGCGGGCG TGCCGGTGGC GCCGCACCAG
GCCTTGAGCC GGGCTGCGAT CGTCGAGCGG CTCGATCGCC TGGCGCAGGC CCTGTCGCAT
GACCTGGGCG ATGCCGACGA GCCGCTGTCC GAATTGCGCG CCGCACTGAC CGGCGACGAG
AACGAGGCCG CCATCCGCGA GATCGCCGCC AAGGCCGATG TCTTCGAGAT CGACGAGGCG
CTGGCCCTGG TCAATGCCTT GCGCGAGCGC CTGTCCACTC CCTCCTTGAC CCAGCCCGAG
CCATGA
|
|---|
| Protein sequence | MTGRQTLARR LLYSMLPWYL LLSLTVTGVQ MAIQTVTVRA AIVDDLASLG RTVEPGITDA
VWELDIPRLA ALSRGVRQNA IVTAVQVRSD NGALLVSDGE LPDAAALPAG PGGVSAAHAW
QTVPLARAVS TRPARLIGHL HLYSGPQVLW DRTKYGLLVV LLNSIVVTTG LWLMFSWTVR
HRLSKEVTRM ARTVAGWRYR KDETTPVEAI AYPYPDELGA LVDALNDSQA RLHDSMRRLD
ALNQNLEHSV AERTVELQRA TDVAEAASRA KGEFLANMSH EIRTPINAIL GMLYLALKSD
LAPSVRNYLG KAQNAAHALL GVINDILDLS KIEAGKLDIE RVEFRLDGVL EMLTDAVGHQ
AAHKGIEFLI RYDPAIPPAL IGDPLRLGQV LLNLCGNAVK FTEHGEVELA FRALPSRPGE
ITVQVNVRDT GIGIAPEVQH RLFEKFSQAD QSTTRRFGGT GLGLAISKQL VELMGGRIWI
EDTLPGRGTT MCFTLPLRIA AESRAHRLDR VEQVGPLLKG VRVLVVDDND VSREIMAEML
RYFQLDVGVA AGGEAALAAL RAATEHPYDL VLMDWRMPGM NGDEVTQRLH VDPQIRSQPK
VVMVTVHGRE QVVRLAEQAG VDGFLIKPVS PSTLLDTLLS VLGRGRLFGS TDAAGPAVPS
AGAGQLAGAQ LLLVEDNDIN REFASEFLRS EGIEVDEAVD GAQALERVQQ QAYDAVLMDI
QMPVMDGLEA ARAIRALGAQ PGHERLATLP IIAMTALAMA QDAQRSRAAG MNDHVTKPIA
PDRLLSVLTR WVQLPAGRRG RMPLPAAASA PALPADLAAL ASLDAHEGVR RIGGKVEAYR
RQLRRFRENH ADAVVELRRL LERDDEVAAE TACHALTGVA GNIGAVALHQ LLVEVDAQLK
RRIRPDAPML DRLEAALRQV HADIDALAQP GAGVPVAPHQ ALSRAAIVER LDRLAQALSH
DLGDADEPLS ELRAALTGDE NEAAIREIAA KADVFEIDEA LALVNALRER LSTPSLTQPE
P
|
|---|
| |